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SUPT3H SPT3 homolog, SAGA and STAGA complex component [ Pan troglodytes (chimpanzee) ]

Gene ID: 462737, updated on 10-Oct-2024

Summary

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Official Symbol
SUPT3Hprovided by VGNC
Official Full Name
SPT3 homolog, SAGA and STAGA complex componentprovided by VGNC
Primary source
VGNC:VGNC:7932
Locus tag
CK820_G0007313
See related
Ensembl:ENSPTRG00000023379
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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See SUPT3H in Genome Data Viewer
Location:
chromosome: 5
Exon count:
23
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 5 NC_072403.2 (50707529..51265086, complement)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 6 NC_072404.1 (50707535..51265093, complement)

Chromosome 5 - NC_072403.2Genomic Context describing neighboring genes Neighboring gene cell division cycle 5 like Neighboring gene uncharacterized LOC107975285 Neighboring gene pre-mRNA-splicing factor RBM22-like Neighboring gene uncharacterized LOC107975150 Neighboring gene microRNA mir-586 Neighboring gene RUNX family transcription factor 2 Neighboring gene uncharacterized LOC107975152 Neighboring gene uncharacterized LOC107975151 Neighboring gene U6 spliceosomal RNA

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein heterodimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coactivator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription initiation protein SPT3 homolog
Names
suppressor of Ty 3 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072403.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    50707529..51265086 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054685865.2 → XP_054541840.1  transcription initiation protein SPT3 homolog isoform X2

  2. XM_009451385.5 → XP_009449660.1  transcription initiation protein SPT3 homolog isoform X5

    UniProtKB/TrEMBL
    A0A2I3TEX7
    Related
    ENSPTRP00000087812.1
    Conserved Domains (3) summary
    pfam02269
    Location:119 → 211
    TFIID-18kDa; Transcription initiation factor IID, 18kD subunit
    pfam15690
    Location:21 → 72
    NRIP1_repr_4; Nuclear receptor-interacting protein 1 repression 4
    cl02176
    Location:370 → 388
    TAF11; TATA Binding Protein (TBP) Associated Factor 11 (TAF11) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex

  3. XM_016955631.4 → XP_016811120.1  transcription initiation protein SPT3 homolog isoform X4

    UniProtKB/TrEMBL
    A0A2I3TEX7

  4. XM_063813084.1 → XP_063669154.1  transcription initiation protein SPT3 homolog isoform X7

    UniProtKB/TrEMBL
    A0A2J8P0L0, A0A6D2XAB9, H2QT40

  5. XM_024357234.3 → XP_024213002.1  transcription initiation protein SPT3 homolog isoform X10

    UniProtKB/TrEMBL
    A0A2I3TDN2, A0A2J8P0M1, A0A6D2Y9E5, K7DEW9
    Conserved Domains (1) summary
    pfam02269
    Location:24 → 116
    TFIID-18kDa; Transcription initiation factor IID, 18kD subunit

  6. XM_063813087.1 → XP_063669157.1  transcription initiation protein SPT3 homolog isoform X9

  7. XM_063813088.1 → XP_063669158.1  transcription initiation protein SPT3 homolog isoform X10

    UniProtKB/TrEMBL
    A0A2J8P0M1, A0A6D2Y9E5, K7DEW9

  8. XM_063813078.1 → XP_063669148.1  transcription initiation protein SPT3 homolog isoform X3

  9. XM_063813077.1 → XP_063669147.1  transcription initiation protein SPT3 homolog isoform X1

  10. XM_054685866.2 → XP_054541841.1  transcription initiation protein SPT3 homolog isoform X6

  11. XM_054685867.2 → XP_054541842.1  transcription initiation protein SPT3 homolog isoform X8

  12. XM_063813080.1 → XP_063669150.1  transcription initiation protein SPT3 homolog isoform X6

  13. XM_063813079.1 → XP_063669149.1  transcription initiation protein SPT3 homolog isoform X6

  14. XM_063813083.1 → XP_063669153.1  transcription initiation protein SPT3 homolog isoform X6

  15. XM_063813085.1 → XP_063669155.1  transcription initiation protein SPT3 homolog isoform X8

  16. XM_063813081.1 → XP_063669151.1  transcription initiation protein SPT3 homolog isoform X6

  17. XM_063813086.1 → XP_063669156.1  transcription initiation protein SPT3 homolog isoform X8

  18. XM_063813089.1 → XP_063669159.1  transcription initiation protein SPT3 homolog isoform X12

  19. XM_054685870.2 → XP_054541845.1  transcription initiation protein SPT3 homolog isoform X11

RNA

  1. XR_680802.5 RNA Sequence

  2. XR_010158028.1 RNA Sequence

  3. XR_002944240.3 RNA Sequence

  4. XR_010158029.1 RNA Sequence

Nucleotide Protein
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