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CLTB clathrin light chain B [ Pan troglodytes (chimpanzee) ]

Gene ID: 462288, updated on 17-Aug-2024

Summary

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Official Symbol
CLTBprovided by VGNC
Official Full Name
clathrin light chain Bprovided by VGNC
Primary source
VGNC:VGNC:57551
Locus tag
CK820_G0050497
See related
Ensembl:ENSPTRG00000051534
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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See CLTB in Genome Data Viewer
Location:
chromosome: 4
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 4 NC_072402.2 (174011197..174035289, complement)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 5 NC_072403.1 (174027945..174051943, complement)

Chromosome 4 - NC_072402.2Genomic Context describing neighboring genes Neighboring gene NOP16 nucleolar protein Neighboring gene HIG1 hypoxia inducible domain family member 2A Neighboring gene Fas associated factor family member 2 Neighboring gene ring finger protein 44

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables clathrin heavy chain binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural molecule activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in clathrin-dependent endocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of clathrin coat of coated pit IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of clathrin coat of trans-Golgi network vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in postsynaptic endocytic zone cytoplasmic component IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in synaptic vesicle membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
clathrin light chain B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072402.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    174011197..174035289 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016954289.3 → XP_016809778.1  clathrin light chain B isoform X2

    UniProtKB/TrEMBL
    A0A2J8J5X3, A0A6D2WIH8, K7APH6
    Related
    ENSPTRP00000084758.1
    Conserved Domains (1) summary
    pfam01086
    Location:1 → 207
    Clathrin_lg_ch; Clathrin light chain

  2. XM_016954288.4 → XP_016809777.1  clathrin light chain B isoform X1

    UniProtKB/TrEMBL
    A0A2I3SW32, A0A2J8J5X4, A0A6D2Y1U8
    Related
    ENSPTRP00000081187.1
    Conserved Domains (1) summary
    pfam01086
    Location:1 → 225
    Clathrin_lg_ch; Clathrin light chain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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