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AGOS_AFR142C AFR142Cp [ Eremothecium gossypii ATCC 10895 ]

Gene ID: 4621940, updated on 16-Nov-2023

Summary

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Gene symbol
AGOS_AFR142C
Gene description
AFR142Cp
Locus tag
AGOS_AFR142C
Gene type
protein coding
RNA name
AFR142Cp
RefSeq status
PROVISIONAL
Organism
Eremothecium gossypii ATCC 10895 (strain: ATCC 10895, culture-collection: ATCC:10895)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Eremothecium
Old locus tag
AFR142C
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Genomic context

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See AGOS_AFR142C in Genome Data Viewer
Location:
chromosome: VI
Exon count:
1
Sequence:
Chromosome: VI; NC_005787.5 (696874..699402, complement)

Chromosome VI - NC_005787.5Genomic Context describing neighboring genes Neighboring gene AFR140Cp Neighboring gene AFR141Cp Neighboring gene AFR143Cp Neighboring gene AFR144Wp

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_005787.5

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The Ashbya gossypii genome as a tool for mapping the ancient Saccharomyces cerevisiae genome. Dietrich FS, et al. Science, 2004 Apr 9. PMID 15001715
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ribosome binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables translation elongation factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in translational elongation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
AFR142Cp
NP_985689.1
  • Syntenic homolog of Saccharomyces cerevisiae YDR385W (EFT2) and YOR133W (EFT1)

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_005787.5 Reference assembly

    Range
    696874..699402 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_211043.1 → NP_985689.1  AFR142Cp [Eremothecium gossypii ATCC 10895]

    See identical proteins and their annotated locations for NP_985689.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    Q6JEG2, Q754C8
    Conserved Domains (6) summary
    cd01885
    Location:20 → 230
    EF2; Elongation Factor 2 (EF2) in archaea and eukarya
    cd01681
    Location:558 → 730
    aeEF2_snRNP_like_IV; This family represents domain IV of archaeal and eukaryotic elongation factor 2 (aeEF-2) and of an evolutionarily conserved U5 snRNP-specific protein. U5 snRNP is a GTP-binding factor closely related to the ribosomal translocase EF-2. In complex with GTP, ...
    cd04096
    Location:726 → 804
    eEF2_snRNP_like_C; eEF2_snRNP_like_C: this family represents a C-terminal domain of eukaryotic elongation factor 2 (eEF-2) and a homologous domain of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart ...
    PTZ00416
    Location:1 → 842
    PTZ00416; elongation factor 2; Provisional
    cd03700
    Location:378 → 472
    EF2_snRNP_like_II; Domain II of elongation factor 2 and C-terminal domain of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein
    cd16261
    Location:487 → 558
    EF2_snRNP_III; Domain III of Elongation Factor 2 (EF2)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q754C8.1

Gene LinkOut

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Molecular Biology Databases
Research Materials