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AGOS_AFL208C AFL208Cp [ Eremothecium gossypii ATCC 10895 ]

Gene ID: 4621566, updated on 16-Nov-2023

Summary

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Gene symbol
AGOS_AFL208C
Gene description
AFL208Cp
Locus tag
AGOS_AFL208C
Gene type
protein coding
RNA name
AFL208Cp
RefSeq status
PROVISIONAL
Organism
Eremothecium gossypii ATCC 10895 (strain: ATCC 10895, culture-collection: ATCC:10895)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Eremothecium
Old locus tag
AFL208C
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Genomic context

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See AGOS_AFL208C in Genome Data Viewer
Location:
chromosome: VI
Exon count:
1
Sequence:
Chromosome: VI; NC_005787.5 (44149..44868, complement)

Chromosome VI - NC_005787.5Genomic Context describing neighboring genes Neighboring gene AFL210Cp Neighboring gene AFL209Wp Neighboring gene tRNA-Tyr Neighboring gene AFL207Cp

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_005787.5

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The Ashbya gossypii genome as a tool for mapping the ancient Saccharomyces cerevisiae genome. Dietrich FS, et al. Science, 2004 Apr 9. PMID 15001715
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables D-ribulose-phosphate 3-epimerase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in pentose-phosphate shunt IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in pentose-phosphate shunt, non-oxidative branch IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
AFL208Cp
NP_985342.1
  • Syntenic homolog of Saccharomyces cerevisiae YJL121C (RPE1)

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_005787.5 Reference assembly

    Range
    44149..44868 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_210696.1 → NP_985342.1  AFL208Cp [Eremothecium gossypii ATCC 10895]

    See identical proteins and their annotated locations for NP_985342.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    Q755M2
    Conserved Domains (1) summary
    PTZ00170
    Location:3 → 232
    PTZ00170; D-ribulose-5-phosphate 3-epimerase; Provisional
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q755M2.1

Gene LinkOut

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Molecular Biology Databases
Research Materials