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AMACR alpha-methylacyl-CoA racemase [ Pan troglodytes (chimpanzee) ]

Gene ID: 461953, updated on 10-Oct-2024

Summary

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Gene symbol
AMACR
Gene description
alpha-methylacyl-CoA racemase
See related
Ensembl:ENSPTRG00000016779
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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See AMACR in Genome Data Viewer
Location:
chromosome: 4
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 4 NC_072402.2 (78768164..78789207)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 5 NC_072403.1 (78955542..78975446)

Chromosome 4 - NC_072402.2Genomic Context describing neighboring genes Neighboring gene beta-glucuronidase-like Neighboring gene putative POM121-like protein 1-like Neighboring gene C1q and TNF related 3 Neighboring gene 26S proteasome regulatory subunit 10B-like Neighboring gene solute carrier family 45 member 2 Neighboring gene relaxin family peptide receptor 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Major chimpanzee-specific structural changes in sperm development-associated genes. Kim RN, et al. Funct Integr Genomics, 2011 Sep. PMID 21484476
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-methylacyl-CoA racemase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in bile acid metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-methylacyl-CoA racemase
XP_009447602.3
XP_009447603.1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072402.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    78768164..78789207
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009449327.5 → XP_009447602.3  alpha-methylacyl-CoA racemase isoform X1

    UniProtKB/TrEMBL
    A0A2I3SA62

  2. XM_009449328.4 → XP_009447603.1  alpha-methylacyl-CoA racemase isoform X2

    See identical proteins and their annotated locations for XP_009447603.1

    UniProtKB/TrEMBL
    H2QQQ8
    Related
    ENSPTRP00000028774.6
    Conserved Domains (1) summary
    COG1804
    Location:3 → 131
    CaiB; Crotonobetainyl-CoA:carnitine CoA-transferase CaiB and related acyl-CoA transferases [Lipid transport and metabolism]

RNA

  1. XR_010157261.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials