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PLS1 plastin 1 [ Pan troglodytes (chimpanzee) ]

Gene ID: 460746, updated on 17-Aug-2024

Summary

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Official Symbol
PLS1provided by VGNC
Official Full Name
plastin 1provided by VGNC
Primary source
VGNC:VGNC:2513
Locus tag
CK820_G0006468
See related
Ensembl:ENSPTRG00000015484
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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See PLS1 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
24
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 2 NC_086015.1 (145789145..145924179)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 3 NC_072401.1 (145698519..145831903)

Chromosome 2 - NC_086015.1Genomic Context describing neighboring genes Neighboring gene 5'-3' exoribonuclease 1 Neighboring gene U1 spliceosomal RNA Neighboring gene eukaryotic translation initiation factor 2-alpha kinase 1-like Neighboring gene ATR serine/threonine kinase Neighboring gene transient receptor potential cation channel subfamily C member 1 Neighboring gene U7 small nuclear RNA Neighboring gene large ribosomal subunit protein uL2-like Neighboring gene procollagen C-endopeptidase enhancer 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables actin filament binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in actin filament bundle assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in actin filament network formation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in actin filament IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in actin filament bundle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
plastin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_086015.1 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    145789145..145924179
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054681122.2 → XP_054537097.1  plastin-1

    UniProtKB/TrEMBL
    A0A2J8P338, A0A6D2WHY3, H2QNI7

  2. XM_054681132.2 → XP_054537107.1  plastin-1

    UniProtKB/TrEMBL
    A0A2J8P338, A0A6D2WHY3, H2QNI7

  3. XM_054681125.2 → XP_054537100.1  plastin-1

    UniProtKB/TrEMBL
    A0A2J8P338, A0A6D2WHY3, H2QNI7

  4. XM_054681130.2 → XP_054537105.1  plastin-1

    UniProtKB/TrEMBL
    A0A2J8P338, A0A6D2WHY3, H2QNI7

  5. XM_054681131.2 → XP_054537106.1  plastin-1

    UniProtKB/TrEMBL
    A0A2J8P338, A0A6D2WHY3, H2QNI7

  6. XM_054681120.2 → XP_054537095.1  plastin-1

    UniProtKB/TrEMBL
    A0A2J8P338, A0A6D2WHY3, H2QNI7

  7. XM_054681119.2 → XP_054537094.1  plastin-1

    UniProtKB/TrEMBL
    A0A2J8P338, A0A6D2WHY3, H2QNI7

  8. XM_054681128.2 → XP_054537103.1  plastin-1

    UniProtKB/TrEMBL
    A0A2J8P338, A0A6D2WHY3, H2QNI7

  9. XM_054681124.2 → XP_054537099.1  plastin-1

    UniProtKB/TrEMBL
    A0A2J8P338, A0A6D2WHY3, H2QNI7

  10. XM_054681127.2 → XP_054537102.1  plastin-1

    UniProtKB/TrEMBL
    A0A2J8P338, A0A6D2WHY3, H2QNI7

  11. XM_001162294.7 → XP_001162294.1  plastin-1

    See identical proteins and their annotated locations for XP_001162294.1

    UniProtKB/TrEMBL
    A0A2J8P338, A0A6D2WHY3, H2QNI7
    Conserved Domains (3) summary
    COG5069
    Location:13 → 621
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    cd21323
    Location:100 → 244
    CH_PLS1_rpt1; first calponin homology (CH) domain found in plastin-1
    cd21329
    Location:391 → 508
    CH_PLS1_rpt3; third calponin homology (CH) domain found in plastin-1

  12. XM_054681118.2 → XP_054537093.1  plastin-1

    UniProtKB/TrEMBL
    A0A2J8P338, A0A6D2WHY3, H2QNI7

  13. XM_063806300.1 → XP_063662370.1  plastin-1

    UniProtKB/TrEMBL
    A0A2J8P338, A0A6D2WHY3, H2QNI7

  14. XM_063806299.1 → XP_063662369.1  plastin-1

    UniProtKB/TrEMBL
    A0A2J8P338, A0A6D2WHY3, H2QNI7

  15. XM_054681123.2 → XP_054537098.1  plastin-1

    UniProtKB/TrEMBL
    A0A2J8P338, A0A6D2WHY3, H2QNI7

  16. XM_063806301.1 → XP_063662371.1  plastin-1

    UniProtKB/TrEMBL
    A0A2J8P338, A0A6D2WHY3, H2QNI7

  17. XM_016942104.4 → XP_016797593.1  plastin-1

    UniProtKB/TrEMBL
    A0A2J8P338, A0A6D2WHY3, H2QNI7
    Related
    ENSPTRP00000026659.3
    Conserved Domains (3) summary
    COG5069
    Location:13 → 621
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    cd21323
    Location:100 → 244
    CH_PLS1_rpt1; first calponin homology (CH) domain found in plastin-1
    cd21329
    Location:391 → 508
    CH_PLS1_rpt3; third calponin homology (CH) domain found in plastin-1
Nucleotide Protein
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