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ZNF654 zinc finger protein 654 [ Pan troglodytes (chimpanzee) ]

Gene ID: 460529, updated on 17-Aug-2024

Summary

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Official Symbol
ZNF654provided by VGNC
Official Full Name
zinc finger protein 654provided by VGNC
Primary source
VGNC:VGNC:57644
Locus tag
CK820_G0043957
See related
Ensembl:ENSPTRG00000030181
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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See ZNF654 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 2 NC_086015.1 (92368029..92453589)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 3 NC_072401.1 (92277287..92361824)

Chromosome 2 - NC_086015.1Genomic Context describing neighboring genes Neighboring gene 5-hydroxytryptamine receptor 1F Neighboring gene U6atac minor spliceosomal RNA Neighboring gene uncharacterized LOC129135333 Neighboring gene CGG triplet repeat binding protein 1 Neighboring gene chromobox protein homolog 5-like Neighboring gene chromosome 3 C3orf38 homolog Neighboring gene ATP-binding cassette sub-family F member 2-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Variation at the NFATC2 locus increases the risk of thiazolidinedione-induced edema in the Diabetes REduction Assessment with ramipril and rosiglitazone Medication (DREAM) study. Bailey SD, et al. Diabetes Care, 2010 Oct. PMID 20628086, Free PMC Article
  2. Gene-centric association signals for lipids and apolipoproteins identified via the HumanCVD BeadChip. Talmud PJ, et al. Am J Hum Genet, 2009 Nov. PMID 19913121, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Observational study of gene-disease association, gene-environment interaction, and pharmacogenomic / toxicogenomic. (HuGE Navigator)
    Title: Variation at the NFATC2 locus increases the risk of thiazolidinedione-induced edema in the Diabetes REduction Assessment with ramipril and rosiglitazone Medication (DREAM) study.
  2. Observational study of gene-disease association. (HuGE Navigator)
    Title: Gene-centric association signals for lipids and apolipoproteins identified via the HumanCVD BeadChip.
Submit: New GeneRIF Correction

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger protein 654

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_086015.1 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    92368029..92453589
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016941513.3 → XP_016797002.1  zinc finger protein 654 isoform X2

    UniProtKB/TrEMBL
    A0A2J8JWF5, A0A6D2WZM1, H2RI23
    Related
    ENSPTRP00000061180.2
    Conserved Domains (2) summary
    sd00017
    Location:789 → 809
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam08580
    Location:870 → 1070
    KAR9; Yeast cortical protein KAR9

  2. XM_024355574.3 → XP_024211342.1  zinc finger protein 654 isoform X4

    Conserved Domains (3) summary
    sd00017
    Location:676 → 696
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:434 → 453
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam08580
    Location:757 → 957
    KAR9; Yeast cortical protein KAR9

  3. XM_016941512.4 → XP_016797001.1  zinc finger protein 654 isoform X1

    Conserved Domains (2) summary
    sd00017
    Location:789 → 809
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:547 → 566
    ZF_C2H2; C2H2 Zn finger [structural motif]

  4. XM_016941514.3 → XP_016797003.1  zinc finger protein 654 isoform X3

    Conserved Domains (3) summary
    sd00017
    Location:676 → 696
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:434 → 453
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam15909
    Location:704 → 756
    zf-C2H2_8; C2H2-type zinc ribbon

  5. XM_054680813.2 → XP_054536788.1  zinc finger protein 654 isoform X6

  6. XM_063806914.1 → XP_063662984.1  zinc finger protein 654 isoform X6

  7. XM_063806919.1 → XP_063662989.1  zinc finger protein 654 isoform X8

  8. XM_063806918.1 → XP_063662988.1  zinc finger protein 654 isoform X8

  9. XM_063806916.1 → XP_063662986.1  zinc finger protein 654 isoform X7

  10. XM_063806912.1 → XP_063662982.1  zinc finger protein 654 isoform X5

    UniProtKB/TrEMBL
    H2R853

  11. XM_063806915.1 → XP_063662985.1  zinc finger protein 654 isoform X6

  12. XM_016941516.4 → XP_016797005.1  zinc finger protein 654 isoform X5

    UniProtKB/TrEMBL
    H2R853
    Related
    ENSPTRP00000068713.1
    Conserved Domains (2) summary
    sd00017
    Location:577 → 597
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:335 → 354
    ZF_C2H2; C2H2 Zn finger [structural motif]

  13. XM_063806913.1 → XP_063662983.1  zinc finger protein 654 isoform X5

    UniProtKB/TrEMBL
    H2R853

  14. XM_063806917.1 → XP_063662987.1  zinc finger protein 654 isoform X7

Nucleotide Protein
Heading Accession and Version

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