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SFMBT1 Scm like with four mbt domains 1 [ Pan troglodytes (chimpanzee) ]

Gene ID: 460439, updated on 10-Oct-2024

Summary

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Official Symbol
SFMBT1provided by VGNC
Official Full Name
Scm like with four mbt domains 1provided by VGNC
Primary source
VGNC:VGNC:48901
Locus tag
CK820_G0004947
See related
Ensembl:ENSPTRG00000015019
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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See SFMBT1 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
25
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 2 NC_086015.1 (56949374..57095068, complement)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 3 NC_072401.1 (56948000..57094733, complement)

Chromosome 2 - NC_086015.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC129143624 Neighboring gene STIM activating enhancer Neighboring gene musculoskeletal, embryonic nuclear protein 1 Neighboring gene uncharacterized LOC104005573 Neighboring gene RFT1 homolog Neighboring gene protein kinase C delta

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chromatin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables histone binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription corepressor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
scm-like with four MBT domains protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_086015.1 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    56949374..57095068 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009445643.5 → XP_009443918.1  scm-like with four MBT domains protein 1 isoform X1

    See identical proteins and their annotated locations for XP_009443918.1

    UniProtKB/TrEMBL
    A0A2I3T4V5, A0A2J8P837, A0A6D2WG03, H2QMS7
    Related
    ENSPTRP00000025946.4
    Conserved Domains (3) summary
    cd09581
    Location:782 → 866
    SAM_Scm-like-4MBT1,2; SAM domain of Scm-like-4MBT1,2 proteins of Polycomb group
    smart00561
    Location:23 → 120
    MBT; Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2
    pfam12140
    Location:502 → 617
    SLED; SLED domain

  2. XM_016941278.4 → XP_016796767.1  scm-like with four MBT domains protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A2I3T4V5, A0A2J8P837, A0A6D2WG03, H2QMS7
    Conserved Domains (3) summary
    cd09581
    Location:782 → 866
    SAM_Scm-like-4MBT1,2; SAM domain of Scm-like-4MBT1,2 proteins of Polycomb group
    smart00561
    Location:23 → 120
    MBT; Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2
    pfam12140
    Location:502 → 617
    SLED; SLED domain

  3. XM_054681989.2 → XP_054537964.1  scm-like with four MBT domains protein 1 isoform X2

  4. XM_016941279.4 → XP_016796768.1  scm-like with four MBT domains protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A2I3T4V5, A0A2J8P837, A0A6D2WG03, H2QMS7
    Conserved Domains (3) summary
    cd09581
    Location:782 → 866
    SAM_Scm-like-4MBT1,2; SAM domain of Scm-like-4MBT1,2 proteins of Polycomb group
    smart00561
    Location:23 → 120
    MBT; Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2
    pfam12140
    Location:502 → 617
    SLED; SLED domain

  5. XM_054681987.2 → XP_054537962.1  scm-like with four MBT domains protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A2J8P837, A0A6D2WG03, H2QMS7

  6. XM_054681988.2 → XP_054537963.1  scm-like with four MBT domains protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A2J8P837, A0A6D2WG03, H2QMS7
Nucleotide Protein
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