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NFIA_099410 polygalacturonase, putative [ Aspergillus fischeri NRRL 181 ]

Gene ID: 4588514, updated on 17-May-2024

Summary

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Gene symbol
NFIA_099410
Gene description
polygalacturonase, putative
Locus tag
NFIA_099410
See related
FungiDB:NFIA_099410; VEuPathDB:NFIA_099410
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Aspergillus fischeri NRRL 181 (strain: NRRL 181, type-material: culture from neotype of Aspergillus fischeri)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae; Aspergillus; Aspergillus subgen. Fumigati
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Genomic context

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See NFIA_099410 in Genome Data Viewer
Location:
chromosome: Unknown
Exon count:
2

NW_001509764.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene hypothetical protein Neighboring gene glycosyltransferase family 28, putative Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_001509764.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables polygalacturonase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in pectin catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polygalacturonase, putative
XP_001262203.1
  • encoded by transcript NFIA_099410A
    predicted by EVM

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NW_001509764.1 Reference assembly

    Range
    1658197..1659670 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001262202.1 → XP_001262203.1  polygalacturonase, putative [Aspergillus fischeri NRRL 181]

    See identical proteins and their annotated locations for XP_001262203.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    A1DBR6
    Conserved Domains (2) summary
    pfam00295
    Location:144 → 469
    Glyco_hydro_28; Glycosyl hydrolases family 28
    cl19188
    Location:197 → 460
    PL-6; Polysaccharide Lyase Family 6
Nucleotide Protein
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Gene LinkOut

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