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SSR2 signal sequence receptor subunit 2 [ Pan troglodytes (chimpanzee) ]

Gene ID: 457379, updated on 17-Aug-2024

Summary

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Official Symbol
SSR2provided by VGNC
Official Full Name
signal sequence receptor subunit 2provided by VGNC
Primary source
VGNC:VGNC:10420
Locus tag
CK820_G0041289
See related
Ensembl:ENSPTRG00000001442
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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See SSR2 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 1 NC_072398.2 (93178756..93190677)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 1 NC_072398.1 (138159055..138170976, complement)

Chromosome 1 - NC_072398.2Genomic Context describing neighboring genes Neighboring gene late endosomal/lysosomal adaptor, MAPK and MTOR activator 2 Neighboring gene ubiquilin 4 Neighboring gene uncharacterized LOC107973415 Neighboring gene Rho/Rac guanine nucleotide exchange factor 2 Neighboring gene uncharacterized LOC134810214 Neighboring gene relaxin family peptide/INSL5 receptor 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
translocon-associated protein subunit beta
Names
signal sequence receptor, beta (translocon-associated protein beta)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072398.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    93178756..93190677
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001162990.6 → XP_001162990.1  translocon-associated protein subunit beta

    See identical proteins and their annotated locations for XP_001162990.1

    UniProtKB/TrEMBL
    H2Q088, K7BGH0, K7C533
    Related
    ENSPTRP00000002439.5
    Conserved Domains (1) summary
    pfam05753
    Location:23 → 198
    TRAP_beta; Translocon-associated protein beta (TRAPB)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials