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P3H1 prolyl 3-hydroxylase 1 [ Pan troglodytes (chimpanzee) ]

Gene ID: 456811, updated on 17-Aug-2024

Summary

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Official Symbol
P3H1provided by VGNC
Official Full Name
prolyl 3-hydroxylase 1provided by VGNC
Primary source
VGNC:VGNC:53223
Locus tag
CK820_G0025518
See related
Ensembl:ENSPTRG00000000617
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Also known as
LEPRE1
Orthologs
human mouse all
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Genomic context

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See P3H1 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 1 NC_072398.2 (188203317..188222969)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 1 NC_072398.1 (43076333..43095963, complement)

Chromosome 1 - NC_072398.2Genomic Context describing neighboring genes Neighboring gene small vasohibin binding protein Neighboring gene transmembrane protein 269 Neighboring gene chromosome 1 C1orf50 homolog Neighboring gene claudin 19 Neighboring gene Y-box binding protein 1 Neighboring gene uncharacterized LOC134807177

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables L-ascorbic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables iron ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables procollagen-proline 3-dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in collagen metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
prolyl 3-hydroxylase 1
Names
leucine proline-enriched proteoglycan (leprecan) 1
XP_016815960.1
XP_016815963.1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072398.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    188203317..188222969
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016960471.4 → XP_016815960.1  prolyl 3-hydroxylase 1 isoform X1

    UniProtKB/TrEMBL
    A0A2J8LZ76, A0A2J8LZ77, A0A6D2XMT2, K7CKM8
    Related
    ENSPTRP00000061697.1
    Conserved Domains (1) summary
    smart00702
    Location:479 → 677
    P4Hc; Prolyl 4-hydroxylase alpha subunit homologues

  2. XM_016960474.4 → XP_016815963.1  prolyl 3-hydroxylase 1 isoform X2

    UniProtKB/TrEMBL
    A0A2J8LZ77
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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