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LSM14A LSM14A mRNA processing body assembly factor [ Pan troglodytes (chimpanzee) ]

Gene ID: 455937, updated on 10-Oct-2024

Summary

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Official Symbol
LSM14Aprovided by VGNC
Official Full Name
LSM14A mRNA processing body assembly factorprovided by VGNC
Primary source
VGNC:VGNC:13206
Locus tag
CK820_G0030133
See related
Ensembl:ENSPTRG00000010813
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Also known as
TIPRL
Orthologs
human mouse all
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Genomic context

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See LSM14A in Genome Data Viewer
Location:
chromosome: 20
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 20 NC_072418.2 (37273421..37333206)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 19 NC_072417.1 (37273736..37333235)

Chromosome 20 - NC_072418.2Genomic Context describing neighboring genes Neighboring gene small ribosomal subunit protein eS4, X isoform-like Neighboring gene coiled-coil-helix-coiled-coil-helix domain-containing protein 2-like Neighboring gene granule associated Rac and RHOG effector 1 Neighboring gene large ribosomal subunit protein eL29-like Neighboring gene glucose-6-phosphate isomerase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Major chimpanzee-specific structural changes in sperm development-associated genes. Kim RN, et al. Funct Integr Genomics, 2011 Sep. PMID 21484476
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in P-body assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in stress granule assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in P-body IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein LSM14 homolog A
Names
LSM14 homolog A
LSM14A, SCD6 homolog A
TIP41, TOR signaling pathway regulator-like
protein FAM61A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072418.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    37273421..37333206
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003316259.7 → XP_003316307.1  protein LSM14 homolog A isoform X2

    See identical proteins and their annotated locations for XP_003316307.1

    UniProtKB/TrEMBL
    A0A2J8QGV7, A0A6D2X5T6, H2QG05, K7AGK9
    Related
    ENSPTRP00000018507.3
    Conserved Domains (2) summary
    cd01736
    Location:4 → 77
    LSm14_N; Like-Sm protein 14, N-terminal domain
    pfam09532
    Location:291 → 399
    FDF; FDF domain

  2. XM_001154782.7 → XP_001154782.1  protein LSM14 homolog A isoform X1

    See identical proteins and their annotated locations for XP_001154782.1

    UniProtKB/TrEMBL
    A0A2J8QGV1, A0A6D2WL77, K7AYW5, K7CIX4
    Related
    ENSPTRP00000074930.1
    Conserved Domains (2) summary
    cd01736
    Location:4 → 77
    LSm14_N; Like-Sm protein 14, N-terminal domain
    pfam09532
    Location:291 → 399
    FDF; FDF domain

  3. XM_054673276.2 → XP_054529251.1  protein LSM14 homolog A isoform X4

  4. XM_054673275.2 → XP_054529250.1  protein LSM14 homolog A isoform X3

Nucleotide Protein
Heading Accession and Version

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