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TAF4B TATA-box binding protein associated factor 4b [ Pan troglodytes (chimpanzee) ]

Gene ID: 455347, updated on 10-Oct-2024

Summary

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Official Symbol
TAF4Bprovided by VGNC
Official Full Name
TATA-box binding protein associated factor 4bprovided by VGNC
Primary source
VGNC:VGNC:5210
Locus tag
CK820_G0018658
See related
Ensembl:ENSPTRG00000009934
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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See TAF4B in Genome Data Viewer
Location:
chromosome: 17
Exon count:
17
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 17 NC_072415.2 (36067688..36247952)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 18 NC_072416.1 (34993411..35171032)

Chromosome 17 - NC_072415.2Genomic Context describing neighboring genes Neighboring gene small ribosomal subunit protein eS24-like Neighboring gene uncharacterized LOC134808589 Neighboring gene proteasome 20S subunit alpha 8 Neighboring gene SIN3-HDAC complex-associated factor-like Neighboring gene small nucleolar RNA U3 Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC134808590 Neighboring gene potassium channel tetramerization domain containing 1 Neighboring gene glutamic acid-rich protein-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II general transcription initiation factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein heterodimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transcription initiation at RNA polymerase II promoter IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of transcription factor TFIID complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription initiation factor TFIID subunit 4B
Names
TAF4b RNA polymerase II, TATA box binding protein (TBP)-associated factor, 105kDa

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072415.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    36067688..36247952
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054672158.2 → XP_054528133.1  transcription initiation factor TFIID subunit 4B isoform X2

  2. XM_016933481.4 → XP_016788970.1  transcription initiation factor TFIID subunit 4B isoform X1

    UniProtKB/TrEMBL
    A0A2J8MPU2, A0A2J8MPW7, A0A6D2Y007, K7CTG6
    Related
    ENSPTRP00000062534.1
    Conserved Domains (3) summary
    pfam05236
    Location:616 → 857
    TAF4; Transcription initiation factor TFIID component TAF4 family
    pfam07531
    Location:258 → 346
    TAFH; NHR1 homology to TAF
    cl26464
    Location:14 → 154
    Atrophin-1; Atrophin-1 family

RNA

  1. XR_001711287.4 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials