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TMEM199 transmembrane protein 199 [ Pan troglodytes (chimpanzee) ]

Gene ID: 454526, updated on 17-Aug-2024

Summary

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Official Symbol
TMEM199provided by VGNC
Official Full Name
transmembrane protein 199provided by VGNC
Primary source
VGNC:VGNC:9718
Locus tag
CK820_G0028410
See related
Ensembl:ENSPTRG00000008914
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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See TMEM199 in Genome Data Viewer
Location:
chromosome: 19
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 19 NC_072417.2 (39222513..39226897, complement)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 17 NC_072415.1 (37406970..37411354, complement)

Chromosome 19 - NC_072417.2Genomic Context describing neighboring genes Neighboring gene vitronectin Neighboring gene SEBOX homeobox Neighboring gene DNA polymerase delta interacting protein 2 Neighboring gene TNF alpha induced protein 1 Neighboring gene intraflagellar transport 20 Neighboring gene transmembrane protein 97

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in vacuolar proton-transporting V-type ATPase complex assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endomembrane system IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transmembrane protein 199

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001242622.1 → NP_001229551.1  transmembrane protein 199

    See identical proteins and their annotated locations for NP_001229551.1

    Status: PROVISIONAL

    Source sequence(s)
    JAQQLN020000019
    UniProtKB/TrEMBL
    A0A2J8LHY4, A0A6D2YCQ4, H2QCH1
    Related
    ENSPTRP00000015215.1, ENSPTRT00000016443.2
    Conserved Domains (1) summary
    pfam11712
    Location:78 → 202
    Vma12; Endoplasmic reticulum-based factor for assembly of V-ATPase

RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072417.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    39222513..39226897 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials