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DHX38 DEAH-box helicase 38 [ Pan troglodytes (chimpanzee) ]

Gene ID: 454237, updated on 10-Oct-2024

Summary

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Official Symbol
DHX38provided by VGNC
Official Full Name
DEAH-box helicase 38provided by VGNC
Primary source
VGNC:VGNC:8977
Locus tag
CK820_G0040169
See related
Ensembl:ENSPTRG00000008338
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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See DHX38 in Genome Data Viewer
Location:
chromosome: 18
Exon count:
27
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 18 NC_072416.2 (70542025..70561110, complement)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 16 NC_072414.1 (70541930..70558672, complement)

Chromosome 18 - NC_072416.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134808766 Neighboring gene uncharacterized LOC107968895 Neighboring gene c-Myc-binding protein-like Neighboring gene polyamine modulated factor 1 binding protein 1 Neighboring gene large ribosomal subunit protein P1-like Neighboring gene thioredoxin like 4B Neighboring gene haptoglobin-related protein Neighboring gene haptoglobin-related protein pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 3'-5' RNA helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in intracellular anatomical structure IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of spliceosomal complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16
Names
DEAH (Asp-Glu-Ala-His) box polypeptide 38
XP_009429494.1
XP_063653429.1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072416.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    70542025..70561110 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063797359.1 → XP_063653429.1  pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16

    UniProtKB/TrEMBL
    A0A2J8K9V0, A0A6D2WS97, H2QBH8

  2. XM_009431219.4 → XP_009429494.1  pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16

    See identical proteins and their annotated locations for XP_009429494.1

    UniProtKB/TrEMBL
    A0A2J8K9V0, A0A6D2WS97, H2QBH8, K7C250
    Conserved Domains (2) summary
    COG1643
    Location:515 → 1146
    HrpA; HrpA-like RNA helicase [Translation, ribosomal structure and biogenesis]
    pfam12316
    Location:187 → 268
    Dsh_C; Segment polarity protein dishevelled (Dsh) C terminal
Nucleotide Protein
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Gene LinkOut

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Molecular Biology Databases
Research Materials