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AARS1 alanyl-tRNA synthetase 1 [ Pan troglodytes (chimpanzee) ]

Gene ID: 454210, updated on 10-Oct-2024

Summary

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Official Symbol
AARS1provided by VGNC
Official Full Name
alanyl-tRNA synthetase 1provided by VGNC
Primary source
VGNC:VGNC:13648
Locus tag
CK820_G0040243
See related
Ensembl:ENSPTRG00000008297
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Also known as
AARS
Orthologs
human mouse all
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Genomic context

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See AARS1 in Genome Data Viewer
Location:
chromosome: 18
Exon count:
22
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 18 NC_072416.2 (72396098..72431933)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 16 NC_072414.1 (72396005..72431844)

Chromosome 18 - NC_072416.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC104002664 Neighboring gene DEAD-box helicase 19B Neighboring gene uncharacterized LOC134808768 Neighboring gene exosome component 6 Neighboring gene small nucleolar RNA U13 Neighboring gene SMG1 pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables alanine-tRNA ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables aminoacyl-tRNA editing activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in alanyl-tRNA aminoacylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alanine--tRNA ligase, cytoplasmic
XP_016785595.3
XP_063653494.1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072416.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    72396098..72431933
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016930106.4 → XP_016785595.3  alanine--tRNA ligase, cytoplasmic isoform X1

    UniProtKB/TrEMBL
    H2RA23, K7B2G8

  2. XM_063797424.1 → XP_063653494.1  alanine--tRNA ligase, cytoplasmic isoform X2

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials