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ZFP90 ZFP90 zinc finger protein [ Pan troglodytes (chimpanzee) ]

Gene ID: 454191, updated on 10-Oct-2024

Summary

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Official Symbol
ZFP90provided by VGNC
Official Full Name
ZFP90 zinc finger proteinprovided by VGNC
Primary source
VGNC:VGNC:9207
Locus tag
CK820_G0044614
See related
Ensembl:ENSPTRG00000042517
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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See ZFP90 in Genome Data Viewer
Location:
chromosome: 18
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 18 NC_072416.2 (66575337..66627420)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 16 NC_072414.1 (66575255..66623518)

Chromosome 18 - NC_072416.2Genomic Context describing neighboring genes Neighboring gene protein arginine methyltransferase 7 Neighboring gene sphingomyelin phosphodiesterase 3 Neighboring gene large ribosomal subunit protein eL33-like Neighboring gene U4 spliceosomal RNA Neighboring gene small nucleolar RNA U109 Neighboring gene small nucleolar RNA U109

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger protein 90 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072416.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    66575337..66627420
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016930058.4 → XP_016785547.1  zinc finger protein 90 homolog isoform X2

    Related
    ENSPTRP00000061171.2
    Conserved Domains (5) summary
    smart00349
    Location:1 → 32
    KRAB; krueppel associated box
    COG5048
    Location:294 → 590
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:513 → 533
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:567 → 589
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:497 → 522
    zf-H2C2_2; Zinc-finger double domain

  2. XM_009431103.5 → XP_009429378.1  zinc finger protein 90 homolog isoform X1

    See identical proteins and their annotated locations for XP_009429378.1

    UniProtKB/TrEMBL
    A0A2I3SC92, A0A2J8Q422, A0A6D2WN11
    Conserved Domains (5) summary
    smart00349
    Location:14 → 74
    KRAB; krueppel associated box
    COG5048
    Location:336 → 632
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:555 → 575
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:269 → 293
    zf-H2C2_2; Zinc-finger double domain
    cd20908
    Location:308 → 356
    SUF4-like; N-terminal domain of Oryza sativa transcription factor SUPPRESSOR OF FRI 4 (OsSUF4), Arabidopsis thaliana SUF4 (AtSUF4), and similar proteins

  3. XM_009431104.4 → XP_009429379.1  zinc finger protein 90 homolog isoform X1

    See identical proteins and their annotated locations for XP_009429379.1

    UniProtKB/TrEMBL
    A0A2I3SC92, A0A2J8Q422, A0A6D2WN11
    Conserved Domains (5) summary
    smart00349
    Location:14 → 74
    KRAB; krueppel associated box
    COG5048
    Location:336 → 632
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:555 → 575
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:269 → 293
    zf-H2C2_2; Zinc-finger double domain
    cd20908
    Location:308 → 356
    SUF4-like; N-terminal domain of Oryza sativa transcription factor SUPPRESSOR OF FRI 4 (OsSUF4), Arabidopsis thaliana SUF4 (AtSUF4), and similar proteins

  4. XM_063797325.1 → XP_063653395.1  zinc finger protein 90 homolog isoform X2

  5. XM_063797324.1 → XP_063653394.1  zinc finger protein 90 homolog isoform X1

    UniProtKB/TrEMBL
    A0A2I3SC92, A0A2J8Q422, A0A6D2WN11

  6. XM_003315163.6 → XP_003315211.1  zinc finger protein 90 homolog isoform X1

    See identical proteins and their annotated locations for XP_003315211.1

    UniProtKB/TrEMBL
    A0A2I3SC92, A0A2J8Q422, A0A6D2WN11
    Conserved Domains (5) summary
    smart00349
    Location:14 → 74
    KRAB; krueppel associated box
    COG5048
    Location:336 → 632
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:555 → 575
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:269 → 293
    zf-H2C2_2; Zinc-finger double domain
    cd20908
    Location:308 → 356
    SUF4-like; N-terminal domain of Oryza sativa transcription factor SUPPRESSOR OF FRI 4 (OsSUF4), Arabidopsis thaliana SUF4 (AtSUF4), and similar proteins

  7. XM_511056.8 → XP_511056.3  zinc finger protein 90 homolog isoform X1

    See identical proteins and their annotated locations for XP_511056.3

    UniProtKB/TrEMBL
    A0A2I3SC92, A0A2J8Q422, A0A6D2WN11
    Conserved Domains (5) summary
    smart00349
    Location:14 → 74
    KRAB; krueppel associated box
    COG5048
    Location:336 → 632
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:555 → 575
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:269 → 293
    zf-H2C2_2; Zinc-finger double domain
    cd20908
    Location:308 → 356
    SUF4-like; N-terminal domain of Oryza sativa transcription factor SUPPRESSOR OF FRI 4 (OsSUF4), Arabidopsis thaliana SUF4 (AtSUF4), and similar proteins

  8. XM_009431101.5 → XP_009429376.1  zinc finger protein 90 homolog isoform X1

    See identical proteins and their annotated locations for XP_009429376.1

    UniProtKB/TrEMBL
    A0A2I3SC92, A0A2J8Q422, A0A6D2WN11
    Related
    ENSPTRP00000074596.1
    Conserved Domains (5) summary
    smart00349
    Location:14 → 74
    KRAB; krueppel associated box
    COG5048
    Location:336 → 632
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:555 → 575
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:269 → 293
    zf-H2C2_2; Zinc-finger double domain
    cd20908
    Location:308 → 356
    SUF4-like; N-terminal domain of Oryza sativa transcription factor SUPPRESSOR OF FRI 4 (OsSUF4), Arabidopsis thaliana SUF4 (AtSUF4), and similar proteins

  9. XM_063797327.1 → XP_063653397.1  zinc finger protein 90 homolog isoform X3

    UniProtKB/TrEMBL
    A0A2I3T4R3, A0A2J8Q407, A0A6D2Y3Y2

  10. XM_063797326.1 → XP_063653396.1  zinc finger protein 90 homolog isoform X3

    UniProtKB/TrEMBL
    A0A2I3T4R3, A0A2J8Q407, A0A6D2Y3Y2

  11. XM_016930059.4 → XP_016785548.1  zinc finger protein 90 homolog isoform X3

    UniProtKB/TrEMBL
    A0A2I3T4R3, A0A2J8Q407, A0A2J8Q469, A0A6D2Y3Y2
    Related
    ENSPTRP00000084230.1
    Conserved Domains (1) summary
    smart00349
    Location:14 → 74
    KRAB; krueppel associated box

  12. XM_016930061.4 → XP_016785550.1  zinc finger protein 90 homolog isoform X4

    UniProtKB/TrEMBL
    A0A2J8Q423, A0A2J8Q475
    Conserved Domains (1) summary
    smart00349
    Location:14 → 74
    KRAB; krueppel associated box

  13. XM_016930060.4 → XP_016785549.1  zinc finger protein 90 homolog isoform X4

    UniProtKB/TrEMBL
    A0A2J8Q423, A0A2J8Q475
    Conserved Domains (1) summary
    smart00349
    Location:14 → 74
    KRAB; krueppel associated box
Nucleotide Protein
Heading Accession and Version

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