U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

PKD1 polycystin 1, transient receptor potential channel interacting [ Pan troglodytes (chimpanzee) ]

Gene ID: 453954, updated on 29-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
PKD1
Gene description
polycystin 1, transient receptor potential channel interacting
Locus tag
CK820_G0054628
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See PKD1 in Genome Data Viewer
Location:
chromosome: 18
Exon count:
48
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 18 NC_072416.2 (4325434..4373257)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 16 NC_072414.1 (4325440..4373258)

Chromosome 18 - NC_072416.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC129137375 Neighboring gene endogenous retrovirus group K member 7 Env polyprotein Neighboring gene microRNA mir-1225 Neighboring gene TSC complex subunit 2 Neighboring gene nth like DNA glycosylase 1 Neighboring gene NHERF family PDZ scaffold protein 2

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables monoatomic cation channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in calcium ion transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in kidney development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
polycystin-1
Names
polycystic kidney disease 1 (autosomal dominant)

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072416.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    4325434..4373257
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063796457.1 → XP_063652527.1  polycystin-1 isoform X4

  2. XM_063796458.1 → XP_063652528.1  polycystin-1 isoform X5

  3. XM_054668686.2 → XP_054524661.1  polycystin-1 isoform X1

  4. XM_054668687.2 → XP_054524662.1  polycystin-1 isoform X2

  5. XM_054668689.2 → XP_054524664.1  polycystin-1 isoform X3

  6. XM_054668690.2 → XP_054524665.1  polycystin-1 isoform X6

  7. XM_063796459.1 → XP_063652529.1  polycystin-1 isoform X7

  8. XM_054668691.1 → XP_054524666.1  polycystin-1 isoform X8

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.