U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

PDXDC1 pyridoxal dependent decarboxylase domain containing 1 [ Pan troglodytes (chimpanzee) ]

Gene ID: 453941, updated on 29-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
PDXDC1
Gene description
pyridoxal dependent decarboxylase domain containing 1
Locus tag
CK820_G0055659
See related
Ensembl:ENSPTRG00000007799 Ensembl:ENSPTRG00000051138
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Also known as
PDXDC2; PDXDC2P
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See PDXDC1 in Genome Data Viewer
Location:
chromosome: 18
Exon count:
30
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 18 NC_072416.2 (17432551..17499141, complement)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 16 NC_072414.1 (17432558..17499146, complement)

Chromosome 18 - NC_072416.2Genomic Context describing neighboring genes Neighboring gene nuclear pore complex-interacting protein family member A7-like Neighboring gene U4 spliceosomal RNA Neighboring gene RRN3 homolog, RNA polymerase I transcription factor Neighboring gene N-terminal asparagine amidase Neighboring gene uncharacterized protein KIAA2013-like Neighboring gene nuclear pore complex-interacting protein family member B12-like Neighboring gene group 10 secretory phospholipase A2-like

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Major chimpanzee-specific structural changes in sperm development-associated genes. Kim RN, et al. Funct Integr Genomics, 2011 Sep. PMID 21484476
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables carbon-carbon lyase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables pyridoxal phosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carboxylic acid metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in intracellular membrane-bounded organelle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
pyridoxal-dependent decarboxylase domain-containing protein 1
Names
pyridoxal-dependent decarboxylase domain containing 2
XP_016784951.3
XP_016784955.3
XP_016784957.3
XP_024205543.2
XP_054524862.1
XP_054524866.1
XP_054524867.1
XP_054524868.1
XP_054524871.1
XP_054524872.1
XP_063652787.1
XP_063652788.1
XP_063652789.1
XP_063652790.1
XP_063652791.1
XP_063652792.1
XP_063652793.1
XP_063652795.1
XP_063652796.1
XP_063652797.1
XP_063652798.1
XP_063652799.1
XP_063652800.1
XP_063652801.1
XP_063652802.1
XP_063652803.1
XP_063652804.1
XP_063652805.1
XP_063652806.1
XP_063652807.1
XP_063652808.1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072416.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    17432551..17499141 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063796719.1 → XP_063652789.1  pyridoxal-dependent decarboxylase domain-containing protein 1 isoform X4

  2. XM_016929462.4 → XP_016784951.3  pyridoxal-dependent decarboxylase domain-containing protein 1 isoform X1

  3. XM_054668893.2 → XP_054524868.1  pyridoxal-dependent decarboxylase domain-containing protein 1 isoform X17

  4. XM_016929468.4 → XP_016784957.3  pyridoxal-dependent decarboxylase domain-containing protein 1 isoform X10

  5. XM_016929466.4 → XP_016784955.3  pyridoxal-dependent decarboxylase domain-containing protein 1 isoform X5

  6. XM_063796720.1 → XP_063652790.1  pyridoxal-dependent decarboxylase domain-containing protein 1 isoform X6

  7. XM_063796736.1 → XP_063652806.1  pyridoxal-dependent decarboxylase domain-containing protein 1 isoform X15

  8. XM_063796733.1 → XP_063652803.1  pyridoxal-dependent decarboxylase domain-containing protein 1 isoform X15

  9. XM_063796734.1 → XP_063652804.1  pyridoxal-dependent decarboxylase domain-containing protein 1 isoform X15

  10. XM_063796725.1 → XP_063652795.1  pyridoxal-dependent decarboxylase domain-containing protein 1 isoform X9

  11. XM_063796735.1 → XP_063652805.1  pyridoxal-dependent decarboxylase domain-containing protein 1 isoform X15

  12. XM_054668892.2 → XP_054524867.1  pyridoxal-dependent decarboxylase domain-containing protein 1 isoform X16

  13. XM_054668891.2 → XP_054524866.1  pyridoxal-dependent decarboxylase domain-containing protein 1 isoform X11

  14. XM_054668887.2 → XP_054524862.1  pyridoxal-dependent decarboxylase domain-containing protein 1 isoform X7

  15. XM_063796726.1 → XP_063652796.1  pyridoxal-dependent decarboxylase domain-containing protein 1 isoform X9

  16. XM_063796727.1 → XP_063652797.1  pyridoxal-dependent decarboxylase domain-containing protein 1 isoform X13

  17. XM_063796718.1 → XP_063652788.1  pyridoxal-dependent decarboxylase domain-containing protein 1 isoform X3

  18. XM_024349775.2 → XP_024205543.2  pyridoxal-dependent decarboxylase domain-containing protein 1 isoform X12

  19. XM_063796721.1 → XP_063652791.1  pyridoxal-dependent decarboxylase domain-containing protein 1 isoform X8

  20. XM_063796717.1 → XP_063652787.1  pyridoxal-dependent decarboxylase domain-containing protein 1 isoform X2

  21. XM_063796728.1 → XP_063652798.1  pyridoxal-dependent decarboxylase domain-containing protein 1 isoform X14

  22. XM_063796723.1 → XP_063652793.1  pyridoxal-dependent decarboxylase domain-containing protein 1 isoform X8

  23. XM_063796722.1 → XP_063652792.1  pyridoxal-dependent decarboxylase domain-containing protein 1 isoform X8

  24. XM_063796738.1 → XP_063652808.1  pyridoxal-dependent decarboxylase domain-containing protein 1 isoform X20

  25. XM_063796732.1 → XP_063652802.1  pyridoxal-dependent decarboxylase domain-containing protein 1 isoform X14

  26. XM_063796731.1 → XP_063652801.1  pyridoxal-dependent decarboxylase domain-containing protein 1 isoform X14

  27. XM_063796730.1 → XP_063652800.1  pyridoxal-dependent decarboxylase domain-containing protein 1 isoform X14

  28. XM_063796729.1 → XP_063652799.1  pyridoxal-dependent decarboxylase domain-containing protein 1 isoform X14

  29. XM_063796737.1 → XP_063652807.1  pyridoxal-dependent decarboxylase domain-containing protein 1 isoform X18

  30. XM_054668897.2 → XP_054524872.1  pyridoxal-dependent decarboxylase domain-containing protein 1 isoform X21

  31. XM_054668896.2 → XP_054524871.1  pyridoxal-dependent decarboxylase domain-containing protein 1 isoform X19

RNA

  1. XR_010152288.1 RNA Sequence

  2. XR_010152291.1 RNA Sequence

  3. XR_008539930.2 RNA Sequence

  4. XR_010152292.1 RNA Sequence

  5. XR_008539932.2 RNA Sequence

  6. XR_010152290.1 RNA Sequence

  7. XR_010152289.1 RNA Sequence

  8. XR_008539933.2 RNA Sequence

  9. XR_008539929.2 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.