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TDP1 tyrosyl-DNA phosphodiesterase 1 [ Pan troglodytes (chimpanzee) ]

Gene ID: 453096, updated on 17-Aug-2024

Summary

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Official Symbol
TDP1provided by VGNC
Official Full Name
tyrosyl-DNA phosphodiesterase 1provided by VGNC
Primary source
VGNC:VGNC:6768
Locus tag
CK820_G0003115
See related
Ensembl:ENSPTRG00000006621
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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See TDP1 in Genome Data Viewer
Location:
chromosome: 15
Exon count:
20
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 15 NC_072413.2 (87959706..88049409)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 14 NC_072412.1 (81244449..81333472)

Chromosome 15 - NC_072413.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134808311 Neighboring gene EF-hand calcium binding domain 11 Neighboring gene ras-related protein Rab-42-like Neighboring gene potassium two pore domain channel subfamily K member 13 Neighboring gene glutaredoxin-1-like Neighboring gene proteasome 26S subunit, ATPase 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Major chimpanzee-specific structural changes in sperm development-associated genes. Kim RN, et al. Funct Integr Genomics, 2011 Sep. PMID 21484476

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 3'-tyrosyl-DNA phosphodiesterase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables double-stranded DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables single-stranded DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tyrosyl-DNA phosphodiesterase 1
NP_001233557.1
XP_009426535.1
XP_016781246.2
XP_016781248.2
XP_024204340.1
XP_054521691.1
XP_054521692.1
XP_063648764.1
XP_063648765.1
XP_063648766.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001246628.1 → NP_001233557.1  tyrosyl-DNA phosphodiesterase 1

    See identical proteins and their annotated locations for NP_001233557.1

    Status: PROVISIONAL

    Source sequence(s)
    AK305668
    UniProtKB/TrEMBL
    A0A2I3RYX6, A0A2J8PKU1, A0A6D2XML6, G2HG04
    Related
    ENSPTRP00000070687.1, ENSPTRT00000081111.1
    Conserved Domains (1) summary
    pfam06087
    Location:166 → 582
    Tyr-DNA_phospho; Tyrosyl-DNA phosphodiesterase

RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072413.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    87959706..88049409
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009428260.4 → XP_009426535.1  tyrosyl-DNA phosphodiesterase 1 isoform X3

    UniProtKB/TrEMBL
    A0A2I3TVD3, A0A2J8PKV1, A0A2J8PKV3, A0A6D2WQQ4, A0A6D2XNS8, H2Q8S0
    Related
    ENSPTRP00000011271.4
    Conserved Domains (1) summary
    pfam06087
    Location:166 → 556
    Tyr-DNA_phospho; Tyrosyl-DNA phosphodiesterase

  2. XM_054665716.2 → XP_054521691.1  tyrosyl-DNA phosphodiesterase 1 isoform X1

    UniProtKB/TrEMBL
    A0A2I3RYX6, A0A2J8PKU1, A0A6D2XML6, G2HG04

  3. XM_024348572.3 → XP_024204340.1  tyrosyl-DNA phosphodiesterase 1 isoform X3

    UniProtKB/TrEMBL
    A0A2I3TVD3, A0A2J8PKV1, A0A2J8PKV3, A0A6D2WQQ4, A0A6D2XNS8, H2Q8S0
    Conserved Domains (1) summary
    pfam06087
    Location:166 → 556
    Tyr-DNA_phospho; Tyrosyl-DNA phosphodiesterase

  4. XM_063792694.1 → XP_063648764.1  tyrosyl-DNA phosphodiesterase 1 isoform X2

    UniProtKB/TrEMBL
    A0A2I3TVD3, A0A2J8PKV3, A0A6D2XNS8

  5. XM_016925757.3 → XP_016781246.2  tyrosyl-DNA phosphodiesterase 1 isoform X1

    UniProtKB/TrEMBL
    A0A2I3RYX6, A0A2J8PKU1, A0A6D2XML6, G2HG04

  6. XM_063792695.1 → XP_063648765.1  tyrosyl-DNA phosphodiesterase 1 isoform X2

    UniProtKB/TrEMBL
    A0A2I3TVD3, A0A2J8PKV3, A0A6D2XNS8

  7. XM_063792696.1 → XP_063648766.1  tyrosyl-DNA phosphodiesterase 1 isoform X2

    UniProtKB/TrEMBL
    A0A2I3TVD3, A0A2J8PKV3, A0A6D2XNS8

  8. XM_016925759.4 → XP_016781248.2  tyrosyl-DNA phosphodiesterase 1 isoform X1

    UniProtKB/TrEMBL
    A0A2I3RYX6, A0A2J8PKU1, A0A6D2XML6, G2HG04

  9. XM_054665717.2 → XP_054521692.1  tyrosyl-DNA phosphodiesterase 1 isoform X3

    UniProtKB/TrEMBL
    A0A2I3TVD3, A0A2J8PKV1, A0A2J8PKV3, A0A6D2WQQ4, A0A6D2XNS8, H2Q8S0

RNA

  1. XR_010150820.1 RNA Sequence

  2. XR_010150819.1 RNA Sequence

  3. XR_010150821.1 RNA Sequence

  4. XR_010150822.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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