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CLDN10 claudin 10 [ Pan troglodytes (chimpanzee) ]

Gene ID: 452626, updated on 17-Aug-2024

Summary

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Official Symbol
CLDN10provided by VGNC
Official Full Name
claudin 10provided by VGNC
Primary source
VGNC:VGNC:13072
Locus tag
CK820_G0022484
See related
Ensembl:ENSPTRG00000005973
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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See CLDN10 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 14 NC_072412.2 (101044624..101189891)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 13 NC_072411.1 (96381198..96526605)

Chromosome 14 - NC_072412.2Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene ATP binding cassette subfamily C member 4 Neighboring gene small nucleolar RNA U13 Neighboring gene uncharacterized LOC134808149 Neighboring gene DAZ interacting zinc finger protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables structural molecule activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in bicellular tight junction assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in bicellular tight junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
claudin-10

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072412.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    101044624..101189891
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009427137.4 → XP_009425412.1  claudin-10 isoform X2

    See identical proteins and their annotated locations for XP_009425412.1

    UniProtKB/TrEMBL
    A0A2I3TM42, A0A2J8M910, A0A6D2XR68
    Related
    ENSPTRP00000090326.1
    Conserved Domains (1) summary
    cl21598
    Location:9 → 177
    PMP22_Claudin; PMP-22/EMP/MP20/Claudin family

  2. XM_509702.8 → XP_509702.1  claudin-10 isoform X1

    See identical proteins and their annotated locations for XP_509702.1

    UniProtKB/TrEMBL
    A0A2J8M921, A0A6D2VVB4, H2Q7Q2
    Related
    ENSPTRP00000010149.3
    Conserved Domains (1) summary
    pfam00822
    Location:4 → 179
    PMP22_Claudin; PMP-22/EMP/MP20/Claudin family
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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