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TRPC4 transient receptor potential cation channel subfamily C member 4 [ Pan troglodytes (chimpanzee) ]

Gene ID: 452544, updated on 10-Oct-2024

Summary

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Official Symbol
TRPC4provided by VGNC
Official Full Name
transient receptor potential cation channel subfamily C member 4provided by VGNC
Primary source
VGNC:VGNC:7836
Locus tag
CK820_G0019686
See related
Ensembl:ENSPTRG00000005795
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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See TRPC4 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 14 NC_072412.2 (36751436..36979821, complement)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 13 NC_072411.1 (31524622..31753291, complement)

Chromosome 14 - NC_072412.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC104001823 Neighboring gene periostin Neighboring gene uncharacterized LOC129136818 Neighboring gene 60 kDa heat shock protein, mitochondrial-like Neighboring gene uncharacterized LOC104001824 Neighboring gene ubiquitin fold modifier 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables inositol 1,4,5 trisphosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables store-operated calcium channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in calcium ion transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cytosolic calcium ion concentration IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of cation channel complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
short transient receptor potential channel 4
Names
transient receptor potential 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072412.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    36751436..36979821 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_509635.6 → XP_509635.2  short transient receptor potential channel 4 isoform X2

    See identical proteins and their annotated locations for XP_509635.2

    UniProtKB/TrEMBL
    A0A2I3SA53, A0A2J8MLF7, A0A6D2XKE9, H2R3J3
    Related
    ENSPTRP00000045620.5
    Conserved Domains (2) summary
    TIGR00870
    Location:17 → 749
    trp; transient-receptor-potential calcium channel protein
    sd00045
    Location:122 → 167
    ANK; ANK repeat [structural motif]

  2. XM_009426907.5 → XP_009425182.1  short transient receptor potential channel 4 isoform X1

    See identical proteins and their annotated locations for XP_009425182.1

    UniProtKB/TrEMBL
    A0A2I3SA53, A0A2J8MLG6, A0A803KGL9, K7B0S8
    Conserved Domains (2) summary
    TIGR00870
    Location:17 → 754
    trp; transient-receptor-potential calcium channel protein
    sd00045
    Location:122 → 167
    ANK; ANK repeat [structural motif]

  3. XM_009426911.4 → XP_009425186.1  short transient receptor potential channel 4 isoform X4

    See identical proteins and their annotated locations for XP_009425186.1

    UniProtKB/TrEMBL
    A0A2I3S605, A0A2I3SA53, A0A2J8MLF0, A0A6D2W536
    Related
    ENSPTRP00000072397.1
    Conserved Domains (2) summary
    TIGR00870
    Location:17 → 749
    trp; transient-receptor-potential calcium channel protein
    sd00045
    Location:122 → 167
    ANK; ANK repeat [structural motif]

  4. XM_054665220.2 → XP_054521195.1  short transient receptor potential channel 4 isoform X2

    UniProtKB/TrEMBL
    A0A2J8MLF7, A0A6D2XKE9, H2R3J3

  5. XM_054665218.2 → XP_054521193.1  short transient receptor potential channel 4 isoform X1

    UniProtKB/TrEMBL
    A0A2J8MLG6, A0A803KGL9, K7B0S8

  6. XM_063792086.1 → XP_063648156.1  short transient receptor potential channel 4 isoform X1

    UniProtKB/TrEMBL
    A0A2J8MLG6, A0A803KGL9, K7B0S8

  7. XM_009426910.5 → XP_009425185.1  short transient receptor potential channel 4 isoform X3

    UniProtKB/TrEMBL
    A0A2I3SA53
    Conserved Domains (4) summary
    cd00204
    Location:64 → 168
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    TIGR00870
    Location:17 → 754
    trp; transient-receptor-potential calcium channel protein
    pfam08344
    Location:176 → 235
    TRP_2; Transient receptor ion channel II
    sd00045
    Location:122 → 167
    ANK; ANK repeat [structural motif]
Nucleotide Protein
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