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SYCP3 synaptonemal complex protein 3 [ Pan troglodytes (chimpanzee) ]

Gene ID: 452174, updated on 17-Aug-2024

Summary

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Official Symbol
SYCP3provided by VGNC
Official Full Name
synaptonemal complex protein 3provided by VGNC
Primary source
VGNC:VGNC:5609
Locus tag
CK820_G0016104
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 10
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 10 NC_072408.2 (108554677..108565626, complement)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 12 NC_072410.1 (107174506..107185471, complement)

Chromosome 10 - NC_072408.2Genomic Context describing neighboring genes Neighboring gene myosin binding protein C1 Neighboring gene uncharacterized LOC107967615 Neighboring gene uncharacterized LOC129136545 Neighboring gene choline phosphotransferase 1 Neighboring gene uncharacterized LOC134807593 Neighboring gene N-acetylglucosamine-1-phosphate transferase subunits alpha and beta Neighboring gene U6 spliceosomal RNA

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in meiotic cell cycle IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in spermatid development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in synaptonemal complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
synaptonemal complex protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072408.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    108554677..108565626 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016924049.3 → XP_016779538.1  synaptonemal complex protein 3 isoform X2

  2. XM_054663473.1 → XP_054519448.1  synaptonemal complex protein 3 isoform X1

    UniProtKB/TrEMBL
    A0A2J8N066, A0A6D2XD48, H2Q6Q3

  3. XM_054663472.1 → XP_054519447.1  synaptonemal complex protein 3 isoform X1

    UniProtKB/TrEMBL
    A0A2J8N066, A0A6D2XD48, H2Q6Q3

  4. XM_024348020.3 → XP_024203788.1  synaptonemal complex protein 3 isoform X1

    UniProtKB/TrEMBL
    A0A2J8N066, A0A6D2XD48, H2Q6Q3
    Conserved Domains (1) summary
    pfam04803
    Location:83 → 214
    Cor1; Cor1/Xlr/Xmr conserved region

  5. XM_024348021.2 → XP_024203789.1  synaptonemal complex protein 3 isoform X1

    UniProtKB/TrEMBL
    A0A2J8N066, A0A6D2XD48, H2Q6Q3
    Conserved Domains (1) summary
    pfam04803
    Location:83 → 214
    Cor1; Cor1/Xlr/Xmr conserved region
Nucleotide Protein
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