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SLC38A1 solute carrier family 38 member 1 [ Pan troglodytes (chimpanzee) ]

Gene ID: 451850, updated on 17-Aug-2024

Summary

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Official Symbol
SLC38A1provided by VGNC
Official Full Name
solute carrier family 38 member 1provided by VGNC
Primary source
VGNC:VGNC:8539
Locus tag
CK820_G0026995
See related
Ensembl:ENSPTRG00000004855
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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See SLC38A1 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
26
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 10 NC_072408.2 (49580791..49667808)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 12 NC_072410.1 (48266102..48349651)

Chromosome 10 - NC_072408.2Genomic Context describing neighboring genes Neighboring gene small ribosomal subunit protein eS26-like Neighboring gene solute carrier family 38 member 2 Neighboring gene uncharacterized LOC134807478 Neighboring gene SR-related CTD associated factor 11 Neighboring gene uncharacterized LOC134807568 Neighboring gene AT-rich interaction domain 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables L-glutamine transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in amino acid transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in glutamine transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sodium-coupled neutral amino acid transporter 1; sodium-coupled neutral amino acid symporter 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072408.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    49580791..49667808
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063785718.1 → XP_063641788.1  sodium-coupled neutral amino acid symporter 1 isoform X3

    UniProtKB/TrEMBL
    A0A2J8LQQ4, A0A6D2XMG0, H2RB81, K7B6S6

  2. XM_063785719.1 → XP_063641789.1  sodium-coupled neutral amino acid symporter 1 isoform X3

    UniProtKB/TrEMBL
    A0A2J8LQQ4, A0A6D2XMG0, H2RB81, K7B6S6

  3. XM_016923572.4 → XP_016779061.1  sodium-coupled neutral amino acid symporter 1 isoform X3

    UniProtKB/TrEMBL
    A0A2J8LQQ4, A0A6D2XMG0, H2RB81, K7B6S6
    Conserved Domains (1) summary
    cl00456
    Location:69 → 474
    SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain

  4. XM_016923573.4 → XP_016779062.1  sodium-coupled neutral amino acid symporter 1 isoform X3

    UniProtKB/TrEMBL
    A0A2J8LQQ4, A0A6D2XMG0, H2RB81, K7B6S6
    Conserved Domains (1) summary
    cl00456
    Location:69 → 474
    SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain

  5. XM_063785716.1 → XP_063641786.1  sodium-coupled neutral amino acid symporter 1 isoform X2

    UniProtKB/TrEMBL
    H2RB81

  6. XM_063785714.1 → XP_063641784.1  sodium-coupled neutral amino acid symporter 1 isoform X1

    UniProtKB/TrEMBL
    A0A2I3SCQ5, A0A2J8LQP9, A0A6D2X568, H2RB81

  7. XM_054664330.2 → XP_054520305.1  sodium-coupled neutral amino acid symporter 1 isoform X1

    UniProtKB/TrEMBL
    A0A2I3SCQ5, A0A2J8LQP9, A0A6D2X568, H2RB81

  8. XM_009425543.5 → XP_009423818.1  sodium-coupled neutral amino acid symporter 1 isoform X2

    See identical proteins and their annotated locations for XP_009423818.1

    UniProtKB/TrEMBL
    H2RB81
    Related
    ENSPTRP00000055280.3
    Conserved Domains (1) summary
    cl00456
    Location:69 → 475
    SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain

  9. XM_063785720.1 → XP_063641790.1  sodium-coupled neutral amino acid symporter 1 isoform X3

    UniProtKB/TrEMBL
    A0A2J8LQQ4, A0A6D2XMG0, H2RB81, K7B6S6

  10. XM_063785717.1 → XP_063641787.1  sodium-coupled neutral amino acid symporter 1 isoform X2

    UniProtKB/TrEMBL
    H2RB81

  11. XM_063785715.1 → XP_063641785.1  sodium-coupled neutral amino acid symporter 1 isoform X1

    UniProtKB/TrEMBL
    A0A2I3SCQ5, A0A2J8LQP9, A0A6D2X568, H2RB81

  12. XM_063785721.1 → XP_063641791.1  sodium-coupled neutral amino acid symporter 1 isoform X3

    UniProtKB/TrEMBL
    A0A2J8LQQ4, A0A6D2XMG0, H2RB81, K7B6S6

  13. XM_063785722.1 → XP_063641792.1  sodium-coupled neutral amino acid symporter 1 isoform X3

    UniProtKB/TrEMBL
    A0A2J8LQQ4, A0A6D2XMG0, H2RB81, K7B6S6

  14. XM_016923570.4 → XP_016779059.1  sodium-coupled neutral amino acid symporter 1 isoform X1

    UniProtKB/TrEMBL
    A0A2I3SCQ5, A0A2J8LQP9, A0A6D2X568, H2RB81
    Related
    ENSPTRP00000074813.1
    Conserved Domains (1) summary
    cl00456
    Location:69 → 480
    SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain

  15. XM_016923574.4 → XP_016779063.1  sodium-coupled neutral amino acid symporter 1 isoform X3

    UniProtKB/TrEMBL
    A0A2J8LQQ4, A0A6D2XMG0, H2RB81, K7B6S6
    Related
    ENSPTRP00000069511.1
    Conserved Domains (1) summary
    cl00456
    Location:69 → 474
    SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain

RNA

  1. XR_010148030.1 RNA Sequence

  2. XR_010148033.1 RNA Sequence

  3. XR_001708019.3 RNA Sequence

  4. XR_001708020.3 RNA Sequence

  5. XR_010148034.1 RNA Sequence

  6. XR_010148031.1 RNA Sequence

  7. XR_010148035.1 RNA Sequence

  8. XR_010148032.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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