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PGAM1 phosphoglycerate mutase 1 [ Pan troglodytes (chimpanzee) ]

Gene ID: 450650, updated on 17-Aug-2024

Summary

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Official Symbol
PGAM1provided by VGNC
Official Full Name
phosphoglycerate mutase 1provided by VGNC
Primary source
VGNC:VGNC:12419
Locus tag
CK820_G0004200
See related
Ensembl:ENSPTRG00000002807
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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See PGAM1 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 8 NC_072406.2 (109547001..109554148)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 10 NC_072408.1 (100160440..100167580)

Chromosome 8 - NC_072406.2Genomic Context describing neighboring genes Neighboring gene FRAT regulator of WNT signaling pathway 2 Neighboring gene ribosomal RNA processing 12 homolog Neighboring gene exosome component 1 Neighboring gene zinc finger DHHC-type palmitoyltransferase 16

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Major chimpanzee-specific structural changes in sperm development-associated genes. Kim RN, et al. Funct Integr Genomics, 2011 Sep. PMID 21484476
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables intramolecular phosphotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glycolytic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
phosphoglycerate mutase 1
Names
phosphoglycerate mutase 1 (brain)
NP_001233414.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001246485.1 → NP_001233414.1  phosphoglycerate mutase 1

    See identical proteins and their annotated locations for NP_001233414.1

    Status: PROVISIONAL

    Source sequence(s)
    AK306903
    UniProtKB/TrEMBL
    A0A2J8PDR3, A0A6D2W7X9, G2HJI9
    Related
    ENSPTRP00000004915.3, ENSPTRT00000005313.4
    Conserved Domains (1) summary
    PRK14115
    Location:4 → 253
    gpmA; 2,3-diphosphoglycerate-dependent phosphoglycerate mutase

RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072406.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    109547001..109554148
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials