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PHF5AP5 PHF5A pseudogene 5 [ Homo sapiens (human) ]

Gene ID: 450234, updated on 17-Sep-2024

Summary

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Official Symbol
PHF5AP5provided by HGNC
Official Full Name
PHF5A pseudogene 5provided by HGNC
Primary source
HGNC:HGNC:23269
See related
AllianceGenome:HGNC:23269
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
PHF5GP
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Genomic context

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See PHF5AP5 in Genome Data Viewer
Location:
2q24.3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (168231335..168232224, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (168688812..168689701, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (169087845..169088734, complement)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene B3GALT1 antisense RNA 1 Neighboring gene uncharacterized LOC124907903 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr2:168801351-168802550 Neighboring gene serine/threonine kinase 39 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16730 Neighboring gene NANOG hESC enhancer GRCh37_chr2:168920562-168921101 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12071 Neighboring gene NANOG hESC enhancer GRCh37_chr2:168972872-168973411 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr2:169067330-169068529 Neighboring gene uncharacterized LOC124906088 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12072 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12073 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12074 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12075 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12076 Neighboring gene uncharacterized LOC107985959 Neighboring gene uncharacterized LOC105373734 Neighboring gene NANOG hESC enhancer GRCh37_chr2:169211617-169212118

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Identification and characterization of a novel murine multigene family containing a PHD-finger-like motif. Trappe R, et al. Biochem Biophys Res Commun, 2002 May 3. PMID 12054543

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Other Names

  • PHD finger protein 5G pseudogene

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_005421.7 

    Range
    101..990
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    168231335..168232224 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    168688812..168689701 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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