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TWIST1 twist family bHLH transcription factor 1 [ Pan troglodytes (chimpanzee) ]

Gene ID: 450135, updated on 17-Aug-2024

Summary

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Official Symbol
TWIST1provided by VGNC
Official Full Name
twist family bHLH transcription factor 1provided by VGNC
Primary source
VGNC:VGNC:57708
Locus tag
CK820_G0021347
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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See TWIST1 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 6 NC_072404.2 (24905439..24910025, complement)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 7 NC_072405.1 (22679161..22682660, complement)

Chromosome 6 - NC_072404.2Genomic Context describing neighboring genes Neighboring gene U6atac minor spliceosomal RNA Neighboring gene histone deacetylase 9 Neighboring gene uncharacterized LOC134810412 Neighboring gene uncharacterized LOC107975722 Neighboring gene Fer3 like bHLH transcription factor Neighboring gene uncharacterized LOC107975723

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Natural TWIST protein variants in a panel of eleven non-human primates: possible implications of TWIST gene-tree for primate species tree. Gachot-Neveu H, et al. Dev Genes Evol, 2002 Nov. PMID 12523351
  2. Elevated gene expression levels distinguish human from non-human primate brains. Cáceres M, et al. Proc Natl Acad Sci U S A, 2003 Oct 28. PMID 14557539, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in developmental process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
twist-related protein 1
Names
twist 1
twist homolog 1 (acrocephalosyndactyly 3; Saethre-Chotzen syndrome)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001009050.2 → NP_001009050.2  twist-related protein 1

    Status: PROVISIONAL

    Source sequence(s)
    AJ488168, AY369850
    UniProtKB/Swiss-Prot
    Q8MI03
    Conserved Domains (1) summary
    pfam00010
    Location:110 → 160
    HLH; Helix-loop-helix DNA-binding domain

RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072404.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    24905439..24910025 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_010158300.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8MI03.1 GenPept UniProtKB/Swiss-Prot:Q8MI03

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.