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sike1 suppressor of IKBKE 1 [ Danio rerio (zebrafish) ]

Gene ID: 449731, updated on 2-Nov-2024

Summary

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Official Symbol
sike1provided by ZNC
Official Full Name
suppressor of IKBKE 1provided by ZNC
Primary source
ZFIN:ZDB-GENE-090312-146
See related
Ensembl:ENSDARG00000102199 AllianceGenome:ZFIN:ZDB-GENE-090312-146
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
im:6912630; si:dkey-3p8.4; si:ch211-286f9.3
Summary
Orthologous to human SIKE1 (suppressor of IKBKE 1). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
human mouse all
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Genomic context

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See sike1 in Genome Data Viewer
Location:
chromosome: 23
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 23 NC_007134.7 (39756415..39772070, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 23 NC_007134.6 (39866286..39879217, complement)

Chromosome 23 - NC_007134.7Genomic Context describing neighboring genes Neighboring gene 5-hydroxytryptamine (serotonin) receptor 6 Neighboring gene mitochondrial contact site and cristae organizing system subunit 10 Neighboring gene iodotyrosine deiodinase Neighboring gene uncharacterized LOC137489147

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
im:6912630; suppressor of IKBKE 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007134.7 Reference GRCz11 Primary Assembly

    Range
    39756415..39772070 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_068216942.1 → XP_068073043.1  suppressor of IKBKE 1 isoform X2

  2. XM_009297080.4 → XP_009295355.1  suppressor of IKBKE 1 isoform X1

    See identical proteins and their annotated locations for XP_009295355.1

    UniProtKB/TrEMBL
    A0A0R4ISE8, A0A8M3AVP9
    Related
    ENSDARP00000139083.1, ENSDART00000159519.2
    Conserved Domains (1) summary
    pfam05769
    Location:2 → 187
    DUF837; Protein of unknown function (DUF837)

  3. XM_009297082.4 → XP_009295357.1  suppressor of IKBKE 1 isoform X2

    UniProtKB/TrEMBL
    A0A8M3AN84
    Conserved Domains (1) summary
    pfam05769
    Location:2 → 179
    DUF837; Protein of unknown function (DUF837)

  4. XM_009297081.4 → XP_009295356.1  suppressor of IKBKE 1 isoform X1

    See identical proteins and their annotated locations for XP_009295356.1

    UniProtKB/TrEMBL
    A0A0R4ISE8, A0A8M3AVP9
    Related
    ENSDARP00000157297.1, ENSDART00000189046.1
    Conserved Domains (1) summary
    pfam05769
    Location:2 → 187
    DUF837; Protein of unknown function (DUF837)

RNA

  1. XR_011008507.1 RNA Sequence

  2. XR_011008509.1 RNA Sequence

  3. XR_011008508.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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