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haao 3-hydroxyanthranilate 3,4-dioxygenase [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 448761, updated on 25-Apr-2024

Summary

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Official Symbol
haaoprovided by Xenbase
Official Full Name
3-hydroxyanthranilate 3,4-dioxygenaseprovided by Xenbase
Primary source
Xenbase:XB-GENE-5800903
See related
Ensembl:ENSXETG00000046490
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Orthologs
human mouse all
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Genomic context

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See haao in Genome Data Viewer
Location:
chromosome: 5
Exon count:
13
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 5 NC_030681.2 (17223898..17301676, complement)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 5 NC_030681.1 (13367581..13437844, complement)

Chromosome 5 - NC_030681.2Genomic Context describing neighboring genes Neighboring gene cytochrome c oxidase subunit VIIa polypeptide 2 like Neighboring gene potassium channel, voltage gated modifier subfamily G, member 3 Neighboring gene transfer RNA isoleucine (anticodon UAU) Neighboring gene uncharacterized LOC116410900 Neighboring gene ZFP36 ring finger protein-like 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Homology

Clone Names

  • MGC89128

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables 3-hydroxyanthranilate 3,4-dioxygenase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables 3-hydroxyanthranilate 3,4-dioxygenase activity IEA
Inferred from Electronic Annotation
more info
  
enables 3-hydroxyanthranilate 3,4-dioxygenase activity ISS
Inferred from Sequence or Structural Similarity
more info
  
enables dioxygenase activity IEA
Inferred from Electronic Annotation
more info
  
enables ferrous iron binding IEA
Inferred from Electronic Annotation
more info
  
enables ferrous iron binding ISS
Inferred from Sequence or Structural Similarity
more info
  
enables iron ion binding IEA
Inferred from Electronic Annotation
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in 'de novo' NAD biosynthetic process from tryptophan IBA
Inferred from Biological aspect of Ancestor
more info
  
acts_upstream_of_or_within 'de novo' NAD biosynthetic process from tryptophan IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within NAD biosynthetic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within NAD biosynthetic process ISS
Inferred from Sequence or Structural Similarity
more info
  
acts_upstream_of_or_within anthranilate metabolic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within pyridine nucleotide biosynthetic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within quinolinate biosynthetic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within quinolinate biosynthetic process ISS
Inferred from Sequence or Structural Similarity
more info
  
involved_in quinolinate metabolic process IBA
Inferred from Biological aspect of Ancestor
more info
  
acts_upstream_of_or_within tryptophan catabolic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in cytosol IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
3-hydroxyanthranilate 3,4-dioxygenase
NP_001006914.1
XP_017949332.2
XP_017949333.2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001006913.1 → NP_001006914.1  3-hydroxyanthranilate 3,4-dioxygenase

    See identical proteins and their annotated locations for NP_001006914.1

    Status: PROVISIONAL

    Source sequence(s)
    BC075395
    UniProtKB/Swiss-Prot
    Q6DIZ0
    UniProtKB/TrEMBL
    F6TQI4
    Related
    ENSXETP00000107934.1, ENSXETT00000116409.1
    Conserved Domains (1) summary
    cd06123
    Location:9 → 159
    cupin_HAO; 3-Hydroxyanthranilate-3,4-dioxygenase, cupin domain

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030681.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    17223898..17301676 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018093843.2 → XP_017949332.2  3-hydroxyanthranilate 3,4-dioxygenase isoform X1

    UniProtKB/TrEMBL
    A0A803K9D5, Q5M903
    Related
    ENSXETP00000116945.1, ENSXETT00000112786.1
    Conserved Domains (1) summary
    cd06123
    Location:16 → 166
    cupin_HAO; 3-Hydroxyanthranilate-3,4-dioxygenase, cupin domain

  2. XM_018093844.2 → XP_017949333.2  3-hydroxyanthranilate 3,4-dioxygenase isoform X2

    UniProtKB/Swiss-Prot
    Q6DIZ0
    UniProtKB/TrEMBL
    F6TQI4
    Related
    ENSXETP00000110683.1, ENSXETT00000110336.1
    Conserved Domains (1) summary
    cd06123
    Location:9 → 159
    cupin_HAO; 3-Hydroxyanthranilate-3,4-dioxygenase, cupin domain
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6DIZ0.1 GenPept UniProtKB/Swiss-Prot:Q6DIZ0

Gene LinkOut

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