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xylt2 xylosyltransferase II [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 448400, updated on 17-Aug-2024

Summary

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Official Symbol
xylt2provided by Xenbase
Official Full Name
xylosyltransferase IIprovided by Xenbase
Primary source
Xenbase:XB-GENE-993408
See related
Ensembl:ENSXETG00000006839
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Orthologs
human mouse all
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Genomic context

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See xylt2 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
11
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 10 NC_030686.2 (43905632..43920789, complement)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 10 NC_030686.1 (35331066..35341894, complement)

Chromosome 10 - NC_030686.2Genomic Context describing neighboring genes Neighboring gene essential meiotic structure-specific endonuclease 1 Neighboring gene uncharacterized LOC100495379 Neighboring gene mitochondrial ribosomal protein L27 Neighboring gene protein HEATR9-like Neighboring gene RAB37, member RAS oncogene family

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC89331

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables protein xylosyltransferase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables protein xylosyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within chondroitin sulfate biosynthetic process IEA
Inferred from Electronic Annotation
more info
  
involved_in chondroitin sulfate proteoglycan biosynthetic process IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in heparan sulfate proteoglycan biosynthetic process IBA
Inferred from Biological aspect of Ancestor
more info
  
acts_upstream_of_or_within heparan sulfate proteoglycan biosynthetic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within proteoglycan biosynthetic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
  
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
xylosyltransferase 2
NP_001006733.1
XP_031749896.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001006732.1 → NP_001006733.1  xylosyltransferase 2

    See identical proteins and their annotated locations for NP_001006733.1

    Status: PROVISIONAL

    Source sequence(s)
    BC075489
    UniProtKB/TrEMBL
    A0A7D9NK06, Q28DI0, Q6DIP6
    Related
    ENSXETP00000014964.5, ENSXETT00000014964.5
    Conserved Domains (2) summary
    pfam12529
    Location:493 → 668
    Xylo_C; Xylosyltransferase C terminal
    cl27418
    Location:210 → 460
    Branch; Core-2/I-Branching enzyme

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030686.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    43905632..43920789 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031894036.1 → XP_031749896.1  xylosyltransferase 2 isoform X1

    UniProtKB/TrEMBL
    A0A7D9NK06, A0A8J1IZH9, Q28DI0
    Conserved Domains (2) summary
    pfam12529
    Location:492 → 667
    Xylo_C; Xylosyltransferase C terminal
    cl27418
    Location:210 → 460
    Branch; Core-2/I-Branching enzyme
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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