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tbc1d16 TBC1 domain family member 16 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 448159, updated on 4-Nov-2024

Summary

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Official Symbol
tbc1d16provided by Xenbase
Official Full Name
TBC1 domain family member 16provided by Xenbase
Primary source
Xenbase:XB-GENE-986691
See related
Ensembl:ENSXETG00000012824 AllianceGenome:Xenbase:XB-GENE-986691
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Summary
Predicted to be involved in negative regulation of inflammatory response. Predicted to be active in extracellular space. Orthologous to human TBC1D16 (TBC1 domain family member 16). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
human mouse all
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Genomic context

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See tbc1d16 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
13
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 10 NC_030686.2 (32896178..32953440)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 10 NC_030686.1 (24770590..24827887)

Chromosome 10 - NC_030686.2Genomic Context describing neighboring genes Neighboring gene coiled-coil domain-containing protein 40-like Neighboring gene uncharacterized LOC105945381 Neighboring gene uncharacterized LOC116407966 Neighboring gene coiled-coil domain-containing protein 40-like Neighboring gene coiled-coil domain 40 molecular ruler complex subunit Neighboring gene chromobox 4 Neighboring gene chromobox 8

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC69474

Gene Ontology Provided by Xenbase

Process Evidence Code Pubs
involved_in negative regulation of inflammatory response IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in extracellular space IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
TBC1 domain family member 16

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001004861.1 → NP_001004861.1  TBC1 domain family member 16

    See identical proteins and their annotated locations for NP_001004861.1

    Status: PROVISIONAL

    Source sequence(s)
    BC074694
    UniProtKB/TrEMBL
    Q6GL22

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030686.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    32896178..32953440
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012958813.3 → XP_012814267.2  TBC1 domain family member 16 isoform X1

    UniProtKB/TrEMBL
    F6XSP3
    Related
    ENSXETP00000028019.5, ENSXETT00000028019.5
    Conserved Domains (1) summary
    smart00164
    Location:385 → 613
    TBC; Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs

  2. XM_031894034.1 → XP_031749894.1  TBC1 domain family member 16 isoform X1

    UniProtKB/TrEMBL
    F6XSP3
    Related
    ENSXETP00000104764.1, ENSXETT00000121887.1
    Conserved Domains (1) summary
    smart00164
    Location:385 → 613
    TBC; Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs

  3. XM_018097697.2 → XP_017953186.2  TBC1 domain family member 16 isoform X1

    UniProtKB/TrEMBL
    F6XSP3
    Conserved Domains (1) summary
    smart00164
    Location:385 → 613
    TBC; Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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