U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

pmel premelanosome protein [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 447954, updated on 5-Mar-2024

Summary

Go to the top of the page Help
Official Symbol
pmelprovided by Xenbase
Official Full Name
premelanosome proteinprovided by Xenbase
Primary source
Xenbase:XB-GENE-6454505
See related
Ensembl:ENSXETG00000009439
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
sil; me20; silv; gp100; pmel-a; pmel-b; pmel17; silver
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 2
Exon count:
13
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 2 NC_030678.2 (137895290..137906752)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 2 NC_030678.1 (134631765..134643376)

Chromosome 2 - NC_030678.2Genomic Context describing neighboring genes Neighboring gene RAB5B, member RAS oncogene family Neighboring gene cyclin-dependent kinase 2 Neighboring gene diacylglycerol kinase alpha Neighboring gene poly(A) specific ribonuclease subunit PAN2

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by Xenbase

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

Go to the top of the page Help
Preferred Names
melanocyte protein PMEL
Names
silver homolog

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030678.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    137895290..137906752
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002934515.5 → XP_002934561.3  melanocyte protein PMEL isoform X1

    UniProtKB/TrEMBL
    F7EQI0, K9J808
    Related
    ENSXETP00000020810.5, ENSXETT00000020810.5
    Conserved Domains (3) summary
    PRK10811
    Location:400 → 562
    rne; ribonuclease E; Reviewed
    PRK11907
    Location:330 → 457
    PRK11907; bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase
    cd00146
    Location:276 → 334
    PKD; polycystic kidney disease I (PKD) domain; similar to other cell-surface modules, with an IG-like fold; domain probably functions as a ligand binding site in protein-protein or protein-carbohydrate interactions; a single instance of the repeat is ...

  2. XM_031897164.1 → XP_031753024.1  melanocyte protein PMEL isoform X2

    UniProtKB/TrEMBL
    A0A8J1J575, F7EQI0
    Conserved Domains (3) summary
    PRK10811
    Location:400 → 556
    rne; ribonuclease E; Reviewed
    PRK11907
    Location:330 → 457
    PRK11907; bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase
    cd00146
    Location:276 → 334
    PKD; polycystic kidney disease I (PKD) domain; similar to other cell-surface modules, with an IG-like fold; domain probably functions as a ligand binding site in protein-protein or protein-carbohydrate interactions; a single instance of the repeat is ...
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.