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asb9.L ankyrin repeat and SOCS box containing 9 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 447776, updated on 4-Nov-2024

Summary

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Official Symbol
asb9.L
Official Full Name
ankyrin repeat and SOCS box containing 9 L homeolog
Primary source
Xenbase:XB-GENE-947928
Locus tag
XELAEV_18011612mg
See related
EnsemblRapid:ENSXLAG00005025227 AllianceGenome:Xenbase:XB-GENE-947928
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
asb9
Summary
Predicted to act upstream of or within intracellular signal transduction; positive regulation of protein catabolic process; and protein ubiquitination. Orthologous to human ASB9 (ankyrin repeat and SOCS box containing 9). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See asb9.L in Genome Data Viewer
Location:
chromosome: 2L
Exon count:
9
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 2L NC_054373.1 (28304505..28328476, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 2L NC_030726.1 (28113951..28134923, complement)

Chromosome 2L - NC_054373.1Genomic Context describing neighboring genes Neighboring gene Fanconi anemia group B protein Neighboring gene motile sperm domain containing 2 L homeolog Neighboring gene ankyrin repeat and SOCS box containing 11 L homeolog Neighboring gene phosphatidylinositol glycan anchor biosynthesis class A L homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC84393

Gene Ontology Provided by Xenbase

Process Evidence Code Pubs
acts_upstream_of_or_within intracellular signal transduction IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within positive regulation of protein catabolic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within protein ubiquitination IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
ankyrin repeat and SOCS box protein 9
Names
ankyrin repeat and SOCS box-containing 9

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001094446.1 → NP_001087915.2  ankyrin repeat and SOCS box protein 9

    Status: PROVISIONAL

    Source sequence(s)
    BC082469
    UniProtKB/TrEMBL
    A0A8J0Q107, Q640X0
    Related
    ENSXLAP00005074897.1, ENSXLAT00005076477.1
    Conserved Domains (5) summary
    cd00204
    Location:56 → 180
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    cd03728
    Location:247 → 288
    SOCS_ASB_9_11; SOCS (suppressors of cytokine signaling) box of ASB9 and 11 proteins. ASB family members have a C-terminal SOCS box and an N-terminal ankyrin-related sequence. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. ...
    pfam12796
    Location:66 → 155
    Ank_2; Ankyrin repeats (3 copies)
    pfam13637
    Location:30 → 82
    Ank_4; Ankyrin repeats (many copies)
    sd00045
    Location:28 → 59
    ANK; ANK repeat [structural motif]

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054373.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    28304505..28328476 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041581041.1 → XP_041436975.1  ankyrin repeat and SOCS box protein 9 isoform X2

    UniProtKB/TrEMBL
    A0A8J1M7F1, Q640X0
    Conserved Domains (3) summary
    cd03728
    Location:224 → 265
    SOCS_ASB_9_11; SOCS (suppressors of cytokine signaling) box of ASB9 and 11 proteins. ASB family members have a C-terminal SOCS box and an N-terminal ankyrin-related sequence. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. ...
    sd00045
    Location:28 → 59
    ANK; ANK repeat [structural motif]
    cl39094
    Location:45 → 219
    Ank_2; Ankyrin repeats (3 copies)

  2. XM_041581040.1 → XP_041436974.1  ankyrin repeat and SOCS box protein 9 isoform X1

    UniProtKB/TrEMBL
    A0A8J1M5L1, Q640X0
    Conserved Domains (3) summary
    cd03728
    Location:247 → 288
    SOCS_ASB_9_11; SOCS (suppressors of cytokine signaling) box of ASB9 and 11 proteins. ASB family members have a C-terminal SOCS box and an N-terminal ankyrin-related sequence. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. ...
    sd00045
    Location:28 → 59
    ANK; ANK repeat [structural motif]
    cl39094
    Location:45 → 219
    Ank_2; Ankyrin repeats (3 copies)

  3. XM_041581042.1 → XP_041436976.1  ankyrin repeat and SOCS box protein 9 isoform X3

    UniProtKB/TrEMBL
    A0A8J1M6N5, Q640X0
    Conserved Domains (2) summary
    sd00045
    Location:28 → 59
    ANK; ANK repeat [structural motif]
    cl39094
    Location:45 → 219
    Ank_2; Ankyrin repeats (3 copies)
Nucleotide Protein Strain
Heading Accession and Version

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