snrpa1.S small nuclear ribonucleoprotein polypeptide A' S homeolog [Xenopus laevis (African clawed frog)] - Gene

Summary

Official Symbol: snrpa1.S
Official Full Name: small nuclear ribonucleoprotein polypeptide A' S homeolog
Primary source: Xenbase:XB-GENE-1007229
Locus tag: XELAEV_18020451mg
See related: EnsemblRapid:ENSXLAG00005015843
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Xenopus laevis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as: snrpa1
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Genomic context

Location:: chromosome: 3S

Exon count:: 9

Annotation release	Status	Assembly	Chr	Location
101	current	Xenopus_laevis_v10.1 (GCF_017654675.1)	3S	NC_054376.1 (38243147..38251992)
100	previous assembly	Xenopus_laevis_v2 (GCF_001663975.1)	3S	NC_030729.1 (37054634..37063479)

Chromosome 3S - NC_054376.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Gene Ontology Provided by Xenbase

Function	Evidence Code	Pubs
enables U2 snRNA binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within mRNA splicing, via spliceosome	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
part_of U2 snRNP	IEA Inferred from Electronic Annotation more info
part_of ribonucleoprotein complex	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: small nuclear ribonucleoprotein polypeptide A' S homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001094394.1 → NP_001087863.1 small nuclear ribonucleoprotein polypeptide A' S homeolog

See identical proteins and their annotated locations for NP_001087863.1

Status: PROVISIONAL

Source sequence(s)

BC082389

UniProtKB/TrEMBL

A0A974HQH2, Q641E8

Related

ENSXLAP00005046594.1, ENSXLAT00005047698.1

Conserved Domains (4) summary

smart00446
Location:128 → 146

LRRcap; occurring C-terminal to leucine-rich repeats

pfam14580
Location:1 → 175

LRR_9; Leucine-rich repeat

sd00033
Location:90 → 114

LRR_RI; leucine-rich repeat [structural motif]

pfam12799
Location:88 → 127

LRR_4; Leucine Rich repeats (2 copies)