ppid.S peptidylprolyl isomerase D (cyclophilin D) S homeolog [Xenopus laevis (African clawed frog)] - Gene

Summary

Official Symbol: ppid.S
Official Full Name: peptidylprolyl isomerase D (cyclophilin D) S homeolog
Primary source: Xenbase:XB-GENE-866600
Locus tag: XELAEV_18009192mg
See related: EnsemblRapid:ENSXLAG00005029678 AllianceGenome:Xenbase:XB-GENE-866600
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Xenopus laevis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as: cypd; ppid; cyp-40
Summary: Predicted to enable peptidyl-prolyl cis-trans isomerase activity. Predicted to act upstream of or within protein peptidyl-prolyl isomerization. Predicted to be located in cytoplasm. Orthologous to human PPID (peptidylprolyl isomerase D). [provided by Alliance of Genome Resources, Nov 2024]
Annotation information: Note: This gene encodes a 370 aa protein that is found in the cytoplasm. In some databases, it has been labeled incorrectly as 'cyclophilin D'. This same name has also been applied to a different protein, found in the mitochondrion, which is represented by GeneID 100126631, ppif. [13 Feb 2013]
NEW: Try the new Gene table
Try the new Transcript table

Genomic context

Location:: chromosome: 1S

Exon count:: 10

Annotation release	Status	Assembly	Chr	Location
101	current	Xenopus_laevis_v10.1 (GCF_017654675.1)	1S	NC_054372.1 (42008197..42020602)
100	previous assembly	Xenopus_laevis_v2 (GCF_001663975.1)	1S	NC_030725.1 (41724675..41737089)

Chromosome 1S - NC_054372.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to reference sequence details

Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the page Help

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

General gene information

Go to the top of the page Help

Gene Ontology Provided by Xenbase

Function	Evidence Code	Pubs
enables isomerase activity	IEA Inferred from Electronic Annotation more info
enables peptidyl-prolyl cis-trans isomerase activity	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within protein peptidyl-prolyl isomerization	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in cytoplasm	IEA Inferred from Electronic Annotation more info

General protein information

Go to the top of the page Help

Preferred Names: peptidyl-prolyl cis-trans isomerase D

Names: cyclophilin 40; cyclophilin D

NP_001087854.1

EC 5.2.1.8

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001094385.1 → NP_001087854.1 peptidyl-prolyl cis-trans isomerase D

See identical proteins and their annotated locations for NP_001087854.1

Status: PROVISIONAL

Source sequence(s)

BC082380

UniProtKB/TrEMBL

A0A974DUB9, Q641F7

Related

ENSXLAP00005088790.1, ENSXLAT00005090459.1

Conserved Domains (4) summary

cd01926
Location:16 → 182

cyclophilin_ABH_like; cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain. This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which ...

sd00006
Location:223 → 267

TPR; TPR repeat [structural motif]

pfam00515
Location:308 → 340

TPR_1; Tetratricopeptide repeat

pfam13414
Location:277 → 338

TPR_11; TPR repeat