U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

ddx39b.L DEAD-box helicase 39B L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 447706, updated on 17-Aug-2024

Summary

Go to the top of the page Help
Official Symbol
ddx39b.L
Official Full Name
DEAD-box helicase 39B L homeolog
Primary source
Xenbase:XB-GENE-865168
Locus tag
XELAEV_18039182mg
See related
EnsemblRapid:ENSXLAG00005029804
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
bat1; uap56; ddx39b
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 8L
Exon count:
11
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 8L NC_054385.1 (65805220..65823049, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 8L NC_030738.1 (52313694..52331612, complement)

Chromosome 8L - NC_054385.1Genomic Context describing neighboring genes Neighboring gene serine/threonine kinase 19 L homeolog Neighboring gene decapping exoribonuclease L homeolog Neighboring gene uncharacterized LOC108698564 Neighboring gene chromosome 8 C6orf47 homolog L homeolog Neighboring gene apolipoprotein M L homeolog

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Clone Names

  • MGC81606

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
  
enables RNA helicase activity IEA
Inferred from Electronic Annotation
more info
  
enables helicase activity IEA
Inferred from Electronic Annotation
more info
  
enables hydrolase activity IEA
Inferred from Electronic Annotation
more info
  
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in nuclear speck IEA
Inferred from Electronic Annotation
more info
  

General protein information

Go to the top of the page Help
Preferred Names
DEAD-box helicase 39B L homeolog
Names
DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B
HLA-B associated transcript 1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001094376.1 → NP_001087845.1  DEAD-box helicase 39B L homeolog

    See identical proteins and their annotated locations for NP_001087845.1

    Status: PROVISIONAL

    Source sequence(s)
    BC082368
    UniProtKB/TrEMBL
    A0A974H7X4, Q641G9
    Related
    ENSXLAP00005089080.1, ENSXLAT00005090750.1
    Conserved Domains (3) summary
    PTZ00424
    Location:19 → 418
    PTZ00424; helicase 45; Provisional
    cd00079
    Location:288 → 390
    HELICc; Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may ...
    cd00268
    Location:47 → 250
    DEADc; DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif ...

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054385.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    65805220..65823049 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.