ift25.L intraflagellar transport 25 L homeolog [Xenopus laevis (African clawed frog)] - Gene

Summary

Official Symbol: ift25.L
Official Full Name: intraflagellar transport 25 L homeolog
Primary source: Xenbase:XB-GENE-948270
Locus tag: XELAEV_18023200mg
See related: EnsemblRapid:ENSXLAG00005025858 AllianceGenome:Xenbase:XB-GENE-948270
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Xenopus laevis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as: hspb11; hspb11.L
Summary: Predicted to act upstream of or within intraciliary transport. Predicted to be located in centrosome and cilium. Predicted to be part of intraciliary transport particle B. Orthologous to human IFT25 (intraflagellar transport 25). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

Location:: chromosome: 4L

Exon count:: 5

Annotation release	Status	Assembly	Chr	Location
101	current	Xenopus_laevis_v10.1 (GCF_017654675.1)	4L	NC_054377.1 (92767713..92774318, complement)
100	previous assembly	Xenopus_laevis_v2 (GCF_001663975.1)	4L	NC_030730.1 (87476190..87482795, complement)

Chromosome 4L - NC_054377.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by Xenbase

Process	Evidence Code	Pubs
acts_upstream_of_or_within intraciliary transport	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in centrosome	IEA Inferred from Electronic Annotation more info
located_in cilium	IEA Inferred from Electronic Annotation more info
part_of intraciliary transport particle B	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: intraflagellar transport 25 L homeolog

Names: heat shock protein family B (small) member 11 L homeolog; heat shock protein family B (small), member 11

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001094357.1 → NP_001087826.1 intraflagellar transport 25 L homeolog

See identical proteins and their annotated locations for NP_001087826.1

Status: PROVISIONAL

Source sequence(s)

BC082207

UniProtKB/TrEMBL

A0A974HNV9, Q66GV7

Related

ENSXLAP00005076930.1, ENSXLAT00005078522.1

Conserved Domains (1) summary

pfam00754
Location:20 → 133

F5_F8_type_C; F5/8 type C domain

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

NC_054377.1 Reference Xenopus_laevis_v10.1 Primary Assembly

Range

92767713..92774318 complement

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GenBank, FASTA, Sequence Viewer (Graphics)