scly.L selenocysteine lyase L homeolog [Xenopus laevis (African clawed frog)] - Gene

Summary

Official Symbol: scly.L
Official Full Name: selenocysteine lyase L homeolog
Primary source: Xenbase:XB-GENE-6077566
Locus tag: XELAEV_18027839mg
See related: EnsemblRapid:ENSXLAG00005015889 AllianceGenome:Xenbase:XB-GENE-6077566
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Xenopus laevis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as: scly
Summary: Predicted to enable selenocysteine lyase activity and transferase activity. Predicted to be located in cytosol. Orthologous to human SCLY (selenocysteine lyase). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 5L

Exon count:: 13

Annotation release	Status	Assembly	Chr	Location
101	current	Xenopus_laevis_v10.1 (GCF_017654675.1)	5L	NC_054379.1 (135744626..135762096, complement)
100	previous assembly	Xenopus_laevis_v2 (GCF_001663975.1)	5L	NC_030732.1 (124665208..124683018, complement)

Chromosome 5L - NC_054379.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by Xenbase

Function	Evidence Code	Pubs
enables lyase activity	IEA Inferred from Electronic Annotation more info
enables selenocysteine lyase activity	IEA Inferred from Electronic Annotation more info
enables transferase activity	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in cytoplasm	IEA Inferred from Electronic Annotation more info
located_in cytosol	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: selenocysteine lyase

NP_001087800.1

EC 4.4.1.16

XP_018117513.1

EC 4.4.1.16

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001094331.1 → NP_001087800.1 selenocysteine lyase

See identical proteins and their annotated locations for NP_001087800.1

Status: VALIDATED

Source sequence(s)

BC081243

UniProtKB/Swiss-Prot

Q66IQ6

Conserved Domains (2) summary

COG1104
Location:15 → 420

NifS; Cysteine sulfinate desulfinase/cysteine desulfurase or related enzyme [Amino acid transport and metabolism]

pfam00266
Location:17 → 408

Aminotran_5; Aminotransferase class-V

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

NC_054379.1 Reference Xenopus_laevis_v10.1 Primary Assembly

Range

135744626..135762096 complement

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GenBank, FASTA, Sequence Viewer (Graphics)