slc43a1.L solute carrier family 43 member 1 L homeolog [Xenopus laevis (African clawed frog)] - Gene

Summary

Official Symbol: slc43a1.L
Official Full Name: solute carrier family 43 member 1 L homeolog
Primary source: Xenbase:XB-GENE-6253599
Locus tag: XELAEV_18035056mg
See related: EnsemblRapid:ENSXLAG00005009975 AllianceGenome:Xenbase:XB-GENE-6253599
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Xenopus laevis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as: slc43a1
Summary: Predicted to enable L-amino acid transmembrane transporter activity and neutral L-amino acid transmembrane transporter activity. Predicted to act upstream of or within neutral amino acid transport and transmembrane transport. Predicted to be located in plasma membrane. Orthologous to human SLC43A1 (solute carrier family 43 member 1). [provided by Alliance of Genome Resources, Nov 2024]
Annotation information: Annotation category: partial on reference assembly
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Genomic context

Location:: chromosome: 7L

Exon count:: 14

Annotation release	Status	Assembly	Chr	Location
101	current	Xenopus_laevis_v10.1 (GCF_017654675.1)	7L	NC_054383.1 (60595011..61097700)
100	previous assembly	Xenopus_laevis_v2 (GCF_001663975.1)	7L	NC_030736.1 (52459111..53009449)

Chromosome 7L - NC_054383.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

The results are consistent with the general pattern that GlyT1-like transporters are present in Muller cells and GlyT2-like transporters in neurons in amphibian retinas.
Title: Differential distribution of glycine transporters in Müller cells and neurons in amphibian retinas.

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General gene information

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Gene Ontology Provided by Xenbase

Function	Evidence Code	Pubs
enables L-amino acid transmembrane transporter activity	IEA Inferred from Electronic Annotation more info
enables neutral L-amino acid transmembrane transporter activity	IEA Inferred from Electronic Annotation more info
enables transmembrane transporter activity	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within neutral amino acid transport	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within transmembrane transport	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in plasma membrane	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: large neutral amino acids transporter small subunit 3

Names: solute carrier family 43 (amino acid system L transporter), member 1 L homeolog; solute carrier family 43, member 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001094328.2 → NP_001087797.1 large neutral amino acids transporter small subunit 3

See identical proteins and their annotated locations for NP_001087797.1

Status: PROVISIONAL

Source sequence(s)

BC081238

UniProtKB/TrEMBL

Q66IQ9

Related

ENSXLAP00005029377.1, ENSXLAT00005030117.1

Conserved Domains (1) summary

cd06174
Location:85 → 229

MFS; The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of ...