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zpld1.S zona pellucida-like domain containing 1 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 447620, updated on 4-Nov-2024

Summary

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Official Symbol
zpld1.S
Official Full Name
zona pellucida-like domain containing 1 S homeolog
Primary source
Xenbase:XB-GENE-5829959
Locus tag
XELAEV_18015408mg
See related
EnsemblRapid:ENSXLAG00005001483 AllianceGenome:Xenbase:XB-GENE-5829959
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
zpld1
Summary
Predicted to be located in cell surface; cytoplasmic vesicle membrane; and extracellular space. Orthologous to human ZPLD1 (zona pellucida like domain containing 1). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See zpld1.S in Genome Data Viewer
Location:
chromosome: 2S
Exon count:
11
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 2S NC_054374.1 (93546146..93597116)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 2S NC_030727.1 (84521437..84572893)

Chromosome 2S - NC_054374.1Genomic Context describing neighboring genes Neighboring gene provisional ortholog of NFKB inhibitor zeta S homeolog Neighboring gene neurexophilin and PC-esterase domain family member 3 S homeolog Neighboring gene zona pellucida-like domain-containing protein 1 Neighboring gene uncharacterized LOC121400354

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC85537

Gene Ontology Provided by Xenbase

Component Evidence Code Pubs
located_in cell surface IEA
Inferred from Electronic Annotation
more info
  
located_in cytoplasmic vesicle IEA
Inferred from Electronic Annotation
more info
  
located_in cytoplasmic vesicle membrane IEA
Inferred from Electronic Annotation
more info
  
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
  
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
zona pellucida-like domain-containing protein 1
Names
ZP domain-containing protein 1
cupulin

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001094327.1 → NP_001087796.1  zona pellucida-like domain-containing protein 1 precursor

    See identical proteins and their annotated locations for NP_001087796.1

    Status: PROVISIONAL

    Source sequence(s)
    BC081237
    UniProtKB/Swiss-Prot
    Q66IR0
    UniProtKB/TrEMBL
    A0A974DJR7
    Related
    ENSXLAP00005004513.1, ENSXLAT00005004579.1
    Conserved Domains (2) summary
    smart00241
    Location:44 → 316
    ZP; Zona pellucida (ZP) domain
    pfam00100
    Location:193 → 313
    Zona_pellucida; Zona pellucida-like domain

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054374.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    93546146..93597116
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q66IR0.1 GenPept UniProtKB/Swiss-Prot:Q66IR0

Gene LinkOut

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