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rnf114.S ring finger protein 114 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 447617, updated on 4-Nov-2024

Summary

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Official Symbol
rnf114.S
Official Full Name
ring finger protein 114 S homeolog
Primary source
Xenbase:XB-GENE-982950
Locus tag
XELAEV_18046168mg
See related
EnsemblRapid:ENSXLAG00005036652 AllianceGenome:Xenbase:XB-GENE-982950
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
rnf114; znf313
Summary
Predicted to enable metal ion binding activity and ubiquitin protein ligase activity. Predicted to act upstream of or within cell differentiation; protein polyubiquitination; and ubiquitin-dependent protein catabolic process. Predicted to be located in cytoplasm and nucleus. Orthologous to human RNF114 (ring finger protein 114). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See rnf114.S in Genome Data Viewer
Location:
chromosome: 9_10S
Exon count:
7
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 9_10S NC_054388.1 (9548926..9561301, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 9_10S NC_030741.1 (9433329..9445370, complement)

Chromosome 9_10S - NC_054388.1Genomic Context describing neighboring genes Neighboring gene ubiquitin conjugating enzyme E2 variant 1 S homeolog Neighboring gene protein snail homolog Sna-like Neighboring gene spermatogenesis associated 2 S homeolog Neighboring gene opsin 7, beta S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC85497

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within cell differentiation IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within protein polyubiquitination IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within protein ubiquitination IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
E3 ubiquitin-protein ligase RNF114; ring finger protein 114 S homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054388.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    9548926..9561301 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018237552.2 → XP_018093041.1  E3 ubiquitin-protein ligase RNF114 isoform X2

    UniProtKB/TrEMBL
    A0A8J0U0W0

  2. XM_018237551.2 → XP_018093040.1  E3 ubiquitin-protein ligase RNF114 isoform X1

    UniProtKB/TrEMBL
    A0A1L8ELG3, A0A974BT85
    Related
    ENSXLAP00005109813.1, ENSXLAT00005112015.1

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001094324.1: Suppressed sequence

    Description
    NM_001094324.1: This RefSeq was removed because it is a nonsense-mediated mRNA decay (NMD) candidate.
Nucleotide Protein Strain
Heading Accession and Version

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