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pmm1.L phosphomannomutase 1 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 447608, updated on 4-Nov-2024

Summary

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Official Symbol
pmm1.L
Official Full Name
phosphomannomutase 1 L homeolog
Primary source
Xenbase:XB-GENE-974469
Locus tag
XELAEV_18045119mg
See related
EnsemblRapid:ENSXLAG00005021727 AllianceGenome:Xenbase:XB-GENE-974469
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
pmm1
Summary
Predicted to enable metal ion binding activity and phosphomannomutase activity. Predicted to act upstream of or within GDP-mannose biosynthetic process; mannose metabolic process; and protein N-linked glycosylation. Predicted to be located in cytosol. Orthologous to human PMM1 (phosphomannomutase 1). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See pmm1.L in Genome Data Viewer
Location:
chromosome: 9_10L
Exon count:
8
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 9_10L NC_054387.1 (98030336..98049541)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 9_10L NC_030740.1 (87459291..87478485)

Chromosome 9_10L - NC_054387.1Genomic Context describing neighboring genes Neighboring gene 4-aminobutyrate aminotransferase L homeolog Neighboring gene transmembrane protein 186 L homeolog Neighboring gene calcium regulated heat stable protein 1 L homeolog Neighboring gene LITAF domain containing L homeolog Neighboring gene lipopolysaccharide-induced tumor necrosis factor-alpha factor homolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC85250

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables isomerase activity IEA
Inferred from Electronic Annotation
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables phosphomannomutase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within GDP-mannose biosynthetic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within mannose metabolic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within protein N-linked glycosylation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in cytosol IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
phosphomannomutase 1 L homeolog
NP_001087784.1
XP_018089985.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001094315.1 → NP_001087784.1  phosphomannomutase 1 L homeolog

    See identical proteins and their annotated locations for NP_001087784.1

    Status: PROVISIONAL

    Source sequence(s)
    BC081220
    UniProtKB/TrEMBL
    A0A974C0R0, Q66IS4
    Related
    ENSXLAP00005063683.1, ENSXLAT00005065197.1
    Conserved Domains (2) summary
    TIGR01484
    Location:9 → 228
    HAD-SF-IIB; HAD-superfamily hydrolase, subfamily IIB
    cl21460
    Location:5 → 245
    HAD_like; Haloacid Dehalogenase-like Hydrolases

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054387.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    98030336..98049541
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018234496.2 → XP_018089985.1  phosphomannomutase 1 L homeolog isoform X1

    UniProtKB/TrEMBL
    A0A8J0TSB8
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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