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fntb.L farnesyltransferase, CAAX box, subunit beta L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 447605, updated on 18-Sep-2024

Summary

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Official Symbol
fntb.L
Official Full Name
farnesyltransferase, CAAX box, subunit beta L homeolog
Primary source
Xenbase:XB-GENE-6253603
Locus tag
XELAEV_18039912mg
See related
EnsemblRapid:ENSXLAG00005035434
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
fntb; fptb; FTase-beta
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Genomic context

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See fntb.L in Genome Data Viewer
Location:
chromosome: 8L
Exon count:
15
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 8L NC_054385.1 (99861699..99889925, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 8L NC_030738.1 (84729194..85196025, complement)

Chromosome 8L - NC_054385.1Genomic Context describing neighboring genes Neighboring gene spectrin beta, erythrocytic L homeolog Neighboring gene eukaryotic translation initiation factor 2 alpha kinase 4 L homeolog Neighboring gene RAB15, member RAS oncogene family L homeolog Neighboring gene carbohydrate sulfotransferase 9-like gene 2 L homeolog Neighboring gene carbohydrate sulfotransferase 9-like gene 3 L homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC85220

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables prenyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables protein farnesyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables protein prenyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within prenylation IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within protein farnesylation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of protein farnesyltransferase complex IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
farnesyltransferase, CAAX box, subunit beta L homeolog; protein farnesyltransferase subunit beta
Names
farnesyltransferase, CAAX box, beta L homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054385.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    99861699..99889925 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041573304.1 → XP_041429238.1  protein farnesyltransferase subunit beta isoform X1

    UniProtKB/TrEMBL
    A0A8J1LI85
    Conserved Domains (2) summary
    cd02893
    Location:224 → 522
    FTase; Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). FTases are a subgroup of PTase family of lipid-modifying enzymes. PTases catalyze the ...
    cl19217
    Location:41 → 197
    SBF; Sodium Bile acid symporter family

  2. XM_041573303.1 → XP_041429237.1  protein farnesyltransferase subunit beta isoform X1

    UniProtKB/TrEMBL
    A0A8J1LI85
    Related
    ENSXLAP00005106080.1, ENSXLAT00005108155.1
    Conserved Domains (2) summary
    cd02893
    Location:224 → 522
    FTase; Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). FTases are a subgroup of PTase family of lipid-modifying enzymes. PTases catalyze the ...
    cl19217
    Location:41 → 197
    SBF; Sodium Bile acid symporter family

  3. XM_018229080.2 → XP_018084569.1  protein farnesyltransferase subunit beta isoform X2

    UniProtKB/TrEMBL
    A0A1L8FAM2, A0A974H8U0, Q66IS7
    Related
    ENSXLAP00005106029.1, ENSXLAT00005108100.1

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001094312.1: Suppressed sequence

    Description
    NM_001094312.1: This RefSeq was removed because it is a nonsense-mediated mRNA decay (NMD) candidate.
Nucleotide Protein Strain
Heading Accession and Version

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