U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

arl6ip1.S ARL6 interacting reticulophagy regulator 1 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 447592, updated on 4-Nov-2024

Summary

Go to the top of the page Help
Official Symbol
arl6ip1.S
Official Full Name
ARL6 interacting reticulophagy regulator 1 S homeolog
Primary source
Xenbase:XB-GENE-17336868
Locus tag
XELAEV_18047521mg
See related
EnsemblRapid:ENSXLAG00005017191 AllianceGenome:Xenbase:XB-GENE-17336868
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Summary
Predicted to act upstream of or within cotranslational protein targeting to membrane. Predicted to be located in membrane. Predicted to be part of Sec61 translocon complex. Human ortholog(s) of this gene implicated in hereditary spastic paraplegia 61. Orthologous to human ARL6IP1 (ADP ribosylation factor like GTPase 6 interacting protein 1). [provided by Alliance of Genome Resources, Nov 2024]
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See arl6ip1.S in Genome Data Viewer
Location:
chromosome: 9_10S
Exon count:
6
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 9_10S NC_054388.1 (89769861..89781782, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 9_10S NC_030741.1 (83101053..83113017, complement)

Chromosome 9_10S - NC_054388.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121399075 Neighboring gene ribosomal protein S15a S homeolog Neighboring gene RAC family serine/threonine-protein kinase homolog Neighboring gene putative protein kinase C delta type homolog

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Clone Names

  • MGC84453

Gene Ontology Provided by Xenbase

Process Evidence Code Pubs
acts_upstream_of_or_within cotranslational protein targeting to membrane IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of Sec61 translocon complex IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

Go to the top of the page Help
Preferred Names
ARL6 interacting reticulophagy regulator 1 S homeolog
Names
ADP ribosylation factor like GTPase 6 interacting protein 1 S homeolog

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001094299.1 → NP_001087768.1  ARL6 interacting reticulophagy regulator 1 S homeolog

    See identical proteins and their annotated locations for NP_001087768.1

    Status: PROVISIONAL

    Source sequence(s)
    BC081190
    UniProtKB/TrEMBL
    A0A974BUX9, A0A974H419, Q642Q4
    Related
    ENSXLAP00005050712.1, ENSXLAT00005051868.1

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054388.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    89769861..89781782 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials