sec22c.L SEC22 homolog C, vesicle trafficking protein L homeolog [Xenopus laevis (African clawed frog)] - Gene

Summary

Official Symbol: sec22c.L
Official Full Name: SEC22 homolog C, vesicle trafficking protein L homeolog
Primary source: Xenbase:XB-GENE-992963
Locus tag: XELAEV_18030602mg
See related: EnsemblRapid:ENSXLAG00005036366 AllianceGenome:Xenbase:XB-GENE-992963
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Xenopus laevis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as: sec22c
Summary: Predicted to act upstream of or within endoplasmic reticulum to Golgi vesicle-mediated transport. Predicted to be located in endoplasmic reticulum membrane. Orthologous to human SEC22C (SEC22 homolog C, vesicle trafficking protein). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

Location:: chromosome: 6L

Exon count:: 10

Annotation release	Status	Assembly	Chr	Location
101	current	Xenopus_laevis_v10.1 (GCF_017654675.1)	6L	NC_054381.1 (9134346..9156459)
100	previous assembly	Xenopus_laevis_v2 (GCF_001663975.1)	6L	NC_030734.1 (6649478..6693318)

Chromosome 6L - NC_054381.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by Xenbase

Process	Evidence Code	Pubs
acts_upstream_of_or_within endoplasmic reticulum to Golgi vesicle-mediated transport	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in endoplasmic reticulum membrane	IEA Inferred from Electronic Annotation more info
located_in membrane	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: SEC22 homolog C, vesicle trafficking protein L homeolog

Names: SEC22 vesicle trafficking protein homolog C

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001094278.1 → NP_001087747.1 SEC22 homolog C, vesicle trafficking protein L homeolog

See identical proteins and their annotated locations for NP_001087747.1

Status: PROVISIONAL

Source sequence(s)

BC081166

UniProtKB/TrEMBL

Q66IW1

Related

ENSXLAP00005108786.1, ENSXLAT00005110950.1

Conserved Domains (1) summary

pfam13774
Location:44 → 107

Longin; Regulated-SNARE-like domain

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

NC_054381.1 Reference Xenopus_laevis_v10.1 Primary Assembly

Range

9134346..9156459

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_018266609.2 → XP_018122098.1 SEC22 homolog C, vesicle trafficking protein L homeolog isoform X1

UniProtKB/TrEMBL

A0A1L8FV40, A0A974HEY9

Conserved Domains (1) summary

cd14824
Location:5 → 126

Longin; longin domain
XM_041565509.1 → XP_041421443.1 SEC22 homolog C, vesicle trafficking protein L homeolog isoform X1

UniProtKB/TrEMBL

A0A1L8FV40, A0A974HEY9

Conserved Domains (1) summary

cd14824
Location:5 → 126

Longin; longin domain