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rbpms2.L RNA binding protein with multiple splicing 2 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 447559, updated on 4-Nov-2024

Summary

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Official Symbol
rbpms2.L
Official Full Name
RNA binding protein with multiple splicing 2 L homeolog
Primary source
Xenbase:XB-GENE-865960
Locus tag
XELAEV_18018092mg
See related
EnsemblRapid:ENSXLAG00005036388 AllianceGenome:Xenbase:XB-GENE-865960
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
rbpms; ehpp01; hermes; rbpms2
Summary
Predicted to enable mRNA binding activity and protein homodimerization activity. Predicted to act upstream of or within negative regulation of smooth muscle cell differentiation. Predicted to be located in cytoplasm and nucleus. Is expressed in cardiovascular system; nervous system; urinary system; and visual system. Orthologous to human RBPMS2 (RNA binding protein, mRNA processing factor 2). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See rbpms2.L in Genome Data Viewer
Location:
chromosome: 3L
Exon count:
9
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 3L NC_054375.1 (100263443..100284998, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 3L NC_030728.1 (84957343..84978904, complement)

Chromosome 3L - NC_054375.1Genomic Context describing neighboring genes Neighboring gene AP-3 complex subunit beta-2 Neighboring gene ornithine decarboxylase antizyme 2-like Neighboring gene secretory carrier membrane protein 5 gene 2 L homeolog Neighboring gene uncharacterized LOC121401543 Neighboring gene secretory carrier membrane protein 5 gene 1 L homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. An atlas of differential gene expression during early Xenopus embryogenesis. Pollet N, et al. Mech Dev, 2005 Mar. PMID 15763213
  2. Axeldb: a Xenopus laevis database focusing on gene expression. Pollet N, et al. Nucleic Acids Res, 2000 Jan 1. PMID 10592204, Free PMC Article
  3. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC84222

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
  
enables protein homodimerization activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within negative regulation of smooth muscle cell differentiation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
RNA binding protein with multiple splicing 2 L homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001094266.1 → NP_001087735.1  RNA binding protein with multiple splicing 2 L homeolog

    See identical proteins and their annotated locations for NP_001087735.1

    Status: PROVISIONAL

    Source sequence(s)
    BC081153
    UniProtKB/TrEMBL
    A0A974DEE4, Q66IX3
    Related
    ENSXLAP00005108931.1, ENSXLAT00005111094.1
    Conserved Domains (1) summary
    cd12683
    Location:19 → 94
    RRM_RBPMS2; RNA recognition motif in vertebrate RNA-binding protein with multiple splicing 2 (RBP-MS2)

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054375.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    100263443..100284998 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018251088.2 → XP_018106577.1  RNA binding protein with multiple splicing 2 L homeolog isoform X2

    UniProtKB/TrEMBL
    A0A8J0URQ8
    Related
    ENSXLAP00005108934.1, ENSXLAT00005111098.1

  2. XM_041585175.1 → XP_041441109.1  RNA binding protein with multiple splicing 2 L homeolog isoform X1

    UniProtKB/TrEMBL
    A0A8J1MHB1
    Related
    ENSXLAP00005108927.1, ENSXLAT00005111091.1
    Conserved Domains (1) summary
    smart00360
    Location:18 → 80
    RRM; RNA recognition motif
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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