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nup205.S nucleoporin 205kDa S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 447519, updated on 17-Aug-2024

Summary

Official Symbol
nup205.S
Official Full Name
nucleoporin 205kDa S homeolog
Primary source
Xenbase:XB-GENE-1009714
Locus tag
XELAEV_18002032mg
See related
EnsemblRapid:ENSXLAG00005000521
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
nup205; xnup205; nup205.L
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Genomic context

Location:
chromosome: 3S
Exon count:
43
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 3S NC_054376.1 (3770804..3813081, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 3S NC_030729.1 (3762243..3804933, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) Unplaced Scaffold NW_016717515.1 (148..506)

Chromosome 3S - NC_054376.1Genomic Context describing neighboring genes Neighboring gene protein FAM180A Neighboring gene short transmembrane mitochondrial protein 1 Neighboring gene CCR4-NOT transcription complex subunit 4 S homeolog Neighboring gene small nucleolar RNA U3

Genomic regions, transcripts, and products

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General protein information

Preferred Names
nucleoporin 205kDa S homeolog
Names
nucleoporin 205kDa L homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001094226.1NP_001087695.1  nucleoporin 205kDa S homeolog

    See identical proteins and their annotated locations for NP_001087695.1

    Status: PROVISIONAL

    Source sequence(s)
    BC081099
    UniProtKB/TrEMBL
    A0A974D873, Q642R6
    Related
    ENSXLAP00005001582.1, ENSXLAT00005001622.1
    Conserved Domains (1) summary
    pfam11894
    Location:1651683
    Nup192; Nuclear pore complex scaffold, nucleoporins 186/192/205

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054376.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    3770804..3813081 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041587666.1XP_041443600.1  nucleoporin 205kDa S homeolog isoform X1

    UniProtKB/TrEMBL
    A0A8J1MRD2, A0A974D873