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cops7b.L COP9 signalosome subunit 7B L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 447496, updated on 17-Aug-2024

Summary

Official Symbol
cops7b.L
Official Full Name
COP9 signalosome subunit 7B L homeolog
Primary source
Xenbase:XB-GENE-17341884
Locus tag
XELAEV_18003263mg
See related
EnsemblRapid:ENSXLAG00005015209
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
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Genomic context

Location:
chromosome: 5L
Exon count:
7
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 5L NC_054379.1 (107613933..107635443)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) Unplaced Scaffold NW_016694835.1 (689117..711747)

Chromosome 5L - NC_054379.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108704672 Neighboring gene phosphodiesterase 6D L homeolog Neighboring gene natriuretic peptide C L homeolog Neighboring gene uncharacterized LOC121393783 Neighboring gene DIS3 like 3'-5' exoribonuclease 2 L homeolog

Genomic regions, transcripts, and products

General gene information

Clone Names

  • MGC81975

Gene Ontology Provided by Xenbase

Process Evidence Code Pubs
acts_upstream_of_or_within COP9 signalosome assembly IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
part_of COP9 signalosome IEA
Inferred from Electronic Annotation
more info
 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
COP9 signalosome subunit 7B L homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001094203.1NP_001087672.1  COP9 signalosome subunit 7B L homeolog

    See identical proteins and their annotated locations for NP_001087672.1

    Status: PROVISIONAL

    Source sequence(s)
    BC081067
    UniProtKB/TrEMBL
    Q66J43
    Related
    ENSXLAP00005044613.1, ENSXLAT00005045693.1
    Conserved Domains (1) summary
    smart00753
    Location:92177
    PAM; PCI/PINT associated module

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054379.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    107613933..107635443
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018241331.2XP_018096820.1  COP9 signalosome subunit 7B L homeolog isoform X1

    UniProtKB/TrEMBL
    A0A8J0U824
    Related
    ENSXLAP00005044627.1, ENSXLAT00005045708.1
  2. XM_018241332.2XP_018096821.1  COP9 signalosome subunit 7B L homeolog isoform X2

    UniProtKB/TrEMBL
    Q66J43