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ergic2.S ERGIC and golgi 2 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 447490, updated on 17-Aug-2024

Summary

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Official Symbol
ergic2.S
Official Full Name
ERGIC and golgi 2 S homeolog
Primary source
Xenbase:XB-GENE-970041
Locus tag
XELAEV_18019943mg
See related
EnsemblRapid:ENSXLAG00005000220
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
ergic2
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Genomic context

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See ergic2.S in Genome Data Viewer
Location:
chromosome: 3S
Exon count:
15
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 3S NC_054376.1 (10144517..10160800, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 3S NC_030729.1 (10151417..10167690, complement)

Chromosome 3S - NC_054376.1Genomic Context describing neighboring genes Neighboring gene parathyroid hormone-like hormone S homeolog Neighboring gene RNA-binding protein with serine-rich domain 1-like Neighboring gene transmembrane and tetratricopeptide repeat containing 1 S homeolog Neighboring gene uncharacterized LOC121402065

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC81917, MGC84385

Gene Ontology Provided by Xenbase

Process Evidence Code Pubs
acts_upstream_of_or_within endoplasmic reticulum to Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within intracellular transport IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in COPII-coated ER to Golgi transport vesicle IEA
Inferred from Electronic Annotation
more info
  
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
  
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
  
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
  
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
  
located_in endoplasmic reticulum-Golgi intermediate compartment membrane IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
ERGIC and golgi 2 S homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001094197.1 → NP_001087666.1  ERGIC and golgi 2 S homeolog

    See identical proteins and their annotated locations for NP_001087666.1

    Status: PROVISIONAL

    Source sequence(s)
    BC082468
    UniProtKB/TrEMBL
    A0A974HQI8, A0A974HS02, Q640X1
    Related
    ENSXLAP00005000548.1, ENSXLAT00005000575.1
    Conserved Domains (2) summary
    pfam07970
    Location:170 → 332
    COPIIcoated_ERV; Endoplasmic reticulum vesicle transporter
    pfam13850
    Location:13 → 95
    ERGIC_N; Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC)

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054376.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    10144517..10160800 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018254335.2 → XP_018109824.1  ERGIC and golgi 2 S homeolog isoform X1

    UniProtKB/TrEMBL
    A0A974HQI8, A0A974HS02, Q640X1

  2. XM_018254336.2 → XP_018109825.1  ERGIC and golgi 2 S homeolog isoform X1

    UniProtKB/TrEMBL
    A0A974HQI8, A0A974HS02, Q640X1
    Related
    ENSXLAP00005000545.1, ENSXLAT00005000572.1

  3. XM_018254337.2 → XP_018109826.1  ERGIC and golgi 2 S homeolog isoform X2

    UniProtKB/TrEMBL
    A0A8J0UUM2, A0A974HS02
    Related
    ENSXLAP00005000544.1, ENSXLAT00005000571.1
Nucleotide Protein Strain
Heading Accession and Version

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