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acadm.S acyl-CoA dehydrogenase medium chain S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 447486, updated on 17-Aug-2024

Summary

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Official Symbol
acadm.S
Official Full Name
acyl-CoA dehydrogenase medium chain S homeolog
Primary source
Xenbase:XB-GENE-17339521
Locus tag
XELAEV_18025076mg
See related
EnsemblRapid:ENSXLAG00005012059
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
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Genomic context

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Location:
chromosome: 4S
Exon count:
12
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 4S NC_054378.1 (61797261..61808394, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 4S NC_030731.1 (55617100..55628280, complement)

Chromosome 4S - NC_054378.1Genomic Context describing neighboring genes Neighboring gene alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3-like Neighboring gene Rab geranylgeranyltransferase subunit beta S homeolog Neighboring gene solute carrier family 44 member 5 S homeolog Neighboring gene LIM homeobox 8 S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC81873

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables flavin adenine dinucleotide binding IEA
Inferred from Electronic Annotation
more info
  
enables medium-chain fatty acyl-CoA dehydrogenase activity IEA
Inferred from Electronic Annotation
more info
  
enables oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within fatty acid beta-oxidation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in mitochondrial matrix IEA
Inferred from Electronic Annotation
more info
  
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
acyl-CoA dehydrogenase medium chain S homeolog
Names
acyl-CoA dehydrogenase, C-4 to C-12 straight chain S homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001094193.1 → NP_001087662.1  acyl-CoA dehydrogenase medium chain S homeolog

    See identical proteins and their annotated locations for NP_001087662.1

    Status: PROVISIONAL

    Source sequence(s)
    BC081056
    UniProtKB/TrEMBL
    A0A974CYZ2, Q66J53
    Related
    ENSXLAP00005035350.1, ENSXLAT00005036243.1
    Conserved Domains (2) summary
    cd01157
    Location:42 → 419
    MCAD; Medium chain acyl-CoA dehydrogenase
    COG1960
    Location:39 → 421
    CaiA; Acyl-CoA dehydrogenase related to the alkylation response protein AidB [Lipid transport and metabolism]

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054378.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    61797261..61808394 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials